myRT

myRT report for GCA_014230845.1_ASM1423084v1

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Seq: JABAEU010000016.1 Clostridium saccharobutylicum strain DJ104 NODE_16_length_81665_cov_31.010516, whole genome shotgun sequence (81665 bp)
Overview 1 RT 1: 22717-25917 bp Neighborhood of RT #1 [22717, 25917] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 22717-22923 bp Feature: domain Description: DDE_Tnp_1 Location: 22747-22885 bp Feature: domain Description: DDE_Tnp_1 Location: 22747-22885 bp Feature: gene Location: 23015-23365 bp Feature: gene Location: 23836-24474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24172-24355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 72-24355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24358-24463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24358-24463 bp Feature: gene Location: 24902-25315 bp Feature: gene Location: 25783-25917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: JABAEU010000035.1 Clostridium saccharobutylicum strain DJ104 NODE_35_length_46788_cov_29.274218, whole genome shotgun sequence (46788 bp)
Overview 1 RT 1: 2646-10555 bp Neighborhood of RT #1 [2646, 10555] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 2646-5213 bp Feature: domain Description: UvrD Location: 3168-4296 bp Feature: domain Description: UvrD Location: 3168-42 96 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: gene Location: 5499-6506 bp Feature: gene Location: 6718-7842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: gene Location: 8144-9448 bp Feature: domain Description: Enpp Location: 8162-9398 bp Feature: domain Description: Enpp Location: 8162 -9398 bp Feature: gene Location: 10019-10555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JABAEU010000048.1 Clostridium saccharobutylicum strain DJ104 NODE_48_length_25978_cov_44.631327, whole genome shotgun sequence (25978 bp)
Overview 1 RT 1: 22386-25935 bp Neighborhood of RT #1 [22386, 25955] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 Feature: gene Location: 22386-22652 bp Feature: domain Description: plantaricin Location: 22407-22650 bp Feature: domain Description: plantaricin Location: 22407-22650 bp Feature: gene Location: 22697-22963 bp Feature: domain Description: plantaricin Location: 22718-22961 bp Feature: domain Description: plantaricin Location: 22718-22961 bp Feature: gene Location: 23037-24572 bp Feature: RT Description: RVT_N Location: 23109-23352 bp Feature: RT Description: RVT_N Location: 23 109-23 3 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23397-24057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 3 97-24057 bp Feature: domain Description: GIIM Note: maturase Location: 24108-24345 bp Feature: domain Description: GIIM Note: maturase Location: 24108-243 45 bp Feature: domain Description: rve_2 Location: 24489-24564 bp Feature: domain Description: rve_2 Location: 24489-24564 bp Feature: gene Location: 25098-25955 bp Feature: domain Description: PHA02517 Location: 25386-25935 bp Feature: domain Description: PHA02517 Location: 253 86-2593 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JABAEU010000009.1 Clostridium saccharobutylicum strain DJ104 NODE_9_length_165109_cov_29.109664, whole genome shotgun sequence (165109 bp)
Overview 1 RT 1: 14326-23044 bp Neighborhood of RT #1 [14326, 23044] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Feature: gene Location: 14326-14853 bp Feature: domain Description: Sig70_famx3 Location: 14332-14815 bp Feature: domain Description: Sig70_famx3 Location: 14 332-14 815 bp Feature: gene Location: 15072-16097 bp Feature: domain Description: DUF1835 Location: 15087-15456 bp Feature: domain Description: DUF1835 Location: 15087-154 56 bp Feature: domain Description: DUF3658 Location: 15546-15858 bp Feature: domain Description: DUF3658 Location: 1554 6-15858 bp Feature: gene Location: 16685-18190 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17321-17963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17321-17963 bp Feature: gene Location: 18187-19995 bp Feature: gene Location: 19997-23044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-Retrons