myRT

myRT report for GCA_014230855.1_ASM1423085v1

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Seq: JABAGZ010000015.1 Clostridium saccharobutylicum strain DJ117 NODE_15_length_81662_cov_62.242128, whole genome shotgun sequence (81662 bp)
Overview 1 RT 1: 55746-58908 bp Neighborhood of RT #1 [55746, 58946] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 55746-55880 bp Feature: gene Location: 56348-56755 bp Feature: gene Location: 57189-57827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57525-57708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57525-57708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57711-57816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5771 1 -5781 6 bp Feature: gene Location: 58298-58648 bp Feature: gene Location: 58740-58946 bp Feature: domain Description: DDE_Tnp_1 Location: 58770-58908 bp Feature: domain Description: DDE_Tnp_1 Location: 58770-58908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JABAGZ010000036.1 Clostridium saccharobutylicum strain DJ117 NODE_36_length_46787_cov_55.191287, whole genome shotgun sequence (46787 bp)
Overview 1 RT 1: 2646-10555 bp Neighborhood of RT #1 [2646, 10555] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 2646-5213 bp Feature: domain Description: UvrD Location: 3168-4296 bp Feature: domain Description: UvrD Location: 3168-42 96 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: gene Location: 5499-6506 bp Feature: gene Location: 6718-7842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: gene Location: 8144-9448 bp Feature: domain Description: Enpp Location: 8162-9398 bp Feature: domain Description: Enpp Location: 8162 -9398 bp Feature: gene Location: 10019-10555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JABAGZ010000064.1 Clostridium saccharobutylicum strain DJ117 NODE_64_length_3108_cov_184.563840, whole genome shotgun sequence (3108 bp)
Overview 1 RT 1: 66-2934 bp Neighborhood of RT #1 [66, 2942] PHA02517 RVT_N RVT-GII GIIM rve_2 Feature: gene Location: 66-881 bp Feature: domain Description: PHA02517 Location: 312-861 bp Feature: domain Description: PHA02517 Location: 3 12-861 bp Feature: gene Location: 1407-2942 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2427 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2715 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2715 bp Feature: domain Description: rve_2 Location: 2859-2934 bp Feature: domain Description: rve_2 Location: 2859-293 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JABAGZ010000007.1 Clostridium saccharobutylicum strain DJ117 NODE_7_length_227342_cov_54.375702, whole genome shotgun sequence (227342 bp)
Overview 1 RT 1: 141890-150570 bp Neighborhood of RT #1 [141890, 150608] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Feature: gene Location: 141890-144937 bp Feature: gene Location: 144939-146747 bp Feature: gene Location: 146744-148249 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147380-148022 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 7380-14 8022 bp Feature: gene Location: 148837-149862 bp Feature: domain Description: DUF1835 Location: 148852-149221 bp Feature: domain Description: DUF1835 Location: 14 8852-14 9221 bp Feature: domain Description: DUF3658 Location: 149311-149623 bp Feature: domain Description: DUF3658 Location: 14 9311-14 9623 bp Feature: gene Location: 150081-150608 bp Feature: domain Description: Sig70_famx3 Location: 150087-150570 bp Feature: domain Description: Sig70_famx3 Location: 150087-150570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954)