myRT

myRT report for GCA_014230885.1_ASM1423088v1

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Seq: JABAHA010000015.1 Clostridium saccharobutylicum strain DJ122 NODE_15_length_81665_cov_50.262293, whole genome shotgun sequence (81665 bp)
Overview 1 RT 1: 22717-25917 bp Neighborhood of RT #1 [22717, 25917] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 22717-22923 bp Feature: domain Description: DDE_Tnp_1 Location: 22747-22885 bp Feature: domain Description: DDE_Tnp_1 Location: 22747-22885 bp Feature: gene Location: 23015-23365 bp Feature: gene Location: 23836-24474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24172-24355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 72-24355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24358-24463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24358-24463 bp Feature: gene Location: 24902-25315 bp Feature: gene Location: 25783-25917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: JABAHA010000038.1 Clostridium saccharobutylicum strain DJ122 NODE_38_length_46788_cov_44.741645, whole genome shotgun sequence (46788 bp)
Overview 1 RT 1: 36234-43643 bp Neighborhood of RT #1 [36234, 44143] Enpp RVT-Retrons UvrD UvrD Feature: gene Location: 36234-36770 bp Feature: gene Location: 37341-38645 bp Feature: domain Description: Enpp Location: 37359-38595 bp Feature: domain Description: Enpp Location: 37359-38595 bp Feature: gene Location: 38947-40071 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39163-39721 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39163-3972 1 bp Feature: gene Location: 40283-41290 bp Feature: gene Location: 41576-44143 bp Feature: domain Description: UvrD Location: 42098-43226 bp Feature: domain Description: UvrD Location: 42 098-432 2 6 bp Feature: domain Description: UvrD Location: 43403-43643 bp Feature: domain Description: UvrD Location: 43403-43643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Enpp (cd16018), RVT-Retrons, UvrD (COG0210)

Seq: JABAHA010000051.1 Clostridium saccharobutylicum strain DJ122 NODE_51_length_25978_cov_73.440215, whole genome shotgun sequence (25978 bp)
Overview 1 RT 1: 24-3591 bp Neighborhood of RT #1 [24, 3593] PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Feature: gene Location: 24-881 bp Feature: domain Description: PHA02517 Location: 312-861 bp Feature: domain Description: PHA02517 Location: 3 12-861 bp Feature: gene Location: 1407-2942 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2427 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2715 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2715 bp Feature: domain Description: rve_2 Location: 2859-2934 bp Feature: domain Description: rve_2 Location: 2859-293 4 bp Feature: gene Location: 3016-3282 bp Feature: domain Description: plantaricin Location: 3037-3280 bp Feature: domain Description: plantaricin Location: 3 03 7-3 280 bp Feature: gene Location: 3327-3593 bp Feature: domain Description: plantaricin Location: 3348-3591 bp Feature: domain Description: plantaricin Location: 3 3 48-3 591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), plantaricin (NF000539)

Seq: JABAHA010000006.1 Clostridium saccharobutylicum strain DJ122 NODE_6_length_227521_cov_42.268347, whole genome shotgun sequence (227521 bp)
Overview 1 RT 1: 142069-150749 bp Neighborhood of RT #1 [142069, 150787] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Feature: gene Location: 142069-145116 bp Feature: gene Location: 145118-146926 bp Feature: gene Location: 146923-148428 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147559-148201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 7559-14 8201 bp Feature: gene Location: 149016-150041 bp Feature: domain Description: DUF1835 Location: 149031-149400 bp Feature: domain Description: DUF1835 Location: 14 9031-14 94 00 bp Feature: domain Description: DUF3658 Location: 149490-149802 bp Feature: domain Description: DUF3658 Location: 14 94 90-14 9802 bp Feature: gene Location: 150260-150787 bp Feature: domain Description: Sig70_famx3 Location: 150266-150749 bp Feature: domain Description: Sig70_famx3 Location: 150266-15074 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954)