myRT

myRT report for GCA_014230915.1_ASM1423091v1

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Seq: JABAHB010000015.1 Clostridium saccharobutylicum strain DJ160 NODE_15_length_81665_cov_85.365703, whole genome shotgun sequence (81665 bp)
Overview 1 RT 1: 55749-58911 bp Neighborhood of RT #1 [55749, 58949] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 55749-55883 bp Feature: gene Location: 56351-56758 bp Feature: gene Location: 57192-57830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57528-57711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57528-5771 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57714-57819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5771 4-5781 9 bp Feature: gene Location: 58301-58651 bp Feature: gene Location: 58743-58949 bp Feature: domain Description: DDE_Tnp_1 Location: 58773-58911 bp Feature: domain Description: DDE_Tnp_1 Location: 58773-5891 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JABAHB010000034.1 Clostridium saccharobutylicum strain DJ160 NODE_34_length_46787_cov_88.007129, whole genome shotgun sequence (46787 bp)
Overview 1 RT 1: 2646-10555 bp Neighborhood of RT #1 [2646, 10555] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 2646-5213 bp Feature: domain Description: UvrD Location: 3168-4296 bp Feature: domain Description: UvrD Location: 3168-42 96 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: gene Location: 5499-6506 bp Feature: gene Location: 6718-7842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: gene Location: 8144-9448 bp Feature: domain Description: Enpp Location: 8162-9398 bp Feature: domain Description: Enpp Location: 8162 -9398 bp Feature: gene Location: 10019-10555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JABAHB010000044.1 Clostridium saccharobutylicum strain DJ160 NODE_44_length_25978_cov_130.135439, whole genome shotgun sequence (25978 bp)
Overview 1 RT 1: 24-3591 bp Neighborhood of RT #1 [24, 3593] PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Feature: gene Location: 24-881 bp Feature: domain Description: PHA02517 Location: 312-861 bp Feature: domain Description: PHA02517 Location: 3 12-861 bp Feature: gene Location: 1407-2942 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2427 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2715 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2715 bp Feature: domain Description: rve_2 Location: 2859-2934 bp Feature: domain Description: rve_2 Location: 2859-293 4 bp Feature: gene Location: 3016-3282 bp Feature: domain Description: plantaricin Location: 3037-3280 bp Feature: domain Description: plantaricin Location: 3 03 7-3 280 bp Feature: gene Location: 3327-3593 bp Feature: domain Description: plantaricin Location: 3348-3591 bp Feature: domain Description: plantaricin Location: 3 3 48-3 591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), plantaricin (NF000539)

Seq: JABAHB010000007.1 Clostridium saccharobutylicum strain DJ160 NODE_7_length_227351_cov_76.518269, whole genome shotgun sequence (227351 bp)
Overview 1 RT 1: 141899-150579 bp Neighborhood of RT #1 [141899, 150617] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Feature: gene Location: 141899-144946 bp Feature: gene Location: 144948-146756 bp Feature: gene Location: 146753-148258 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147389-148031 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 7389-14 8031 bp Feature: gene Location: 148846-149871 bp Feature: domain Description: DUF1835 Location: 148861-149230 bp Feature: domain Description: DUF1835 Location: 14 8861-14 9230 bp Feature: domain Description: DUF3658 Location: 149320-149632 bp Feature: domain Description: DUF3658 Location: 14 9320-14 9632 bp Feature: gene Location: 150090-150617 bp Feature: domain Description: Sig70_famx3 Location: 150096-150579 bp Feature: domain Description: Sig70_famx3 Location: 150096-150579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954)