myRT

myRT report for GCA_014230935.1_ASM1423093v1

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Seq: JABAIX010000016.1 Clostridium saccharobutylicum strain DJ167 NODE_16_length_81662_cov_61.692125, whole genome shotgun sequence (81662 bp)
Overview 1 RT 1: 55746-58908 bp Neighborhood of RT #1 [55746, 58946] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 55746-55880 bp Feature: gene Location: 56348-56755 bp Feature: gene Location: 57189-57827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57525-57708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57525-57708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57711-57816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5771 1 -5781 6 bp Feature: gene Location: 58298-58648 bp Feature: gene Location: 58740-58946 bp Feature: domain Description: DDE_Tnp_1 Location: 58770-58908 bp Feature: domain Description: DDE_Tnp_1 Location: 58770-58908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JABAIX010000032.1 Clostridium saccharobutylicum strain DJ167 NODE_32_length_46787_cov_47.223464, whole genome shotgun sequence (46787 bp)
Overview 1 RT 1: 2646-10555 bp Neighborhood of RT #1 [2646, 10555] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 2646-5213 bp Feature: domain Description: UvrD Location: 3168-4296 bp Feature: domain Description: UvrD Location: 3168-42 96 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: domain Description: UvrD Location: 4473-4713 bp Feature: gene Location: 5499-6506 bp Feature: gene Location: 6718-7842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6934-7492 bp Feature: gene Location: 8144-9448 bp Feature: domain Description: Enpp Location: 8162-9398 bp Feature: domain Description: Enpp Location: 8162 -9398 bp Feature: gene Location: 10019-10555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JABAIX010000061.1 Clostridium saccharobutylicum strain DJ167 NODE_61_length_3108_cov_147.448037, whole genome shotgun sequence (3108 bp)
Overview 1 RT 1: 167-3065 bp Neighborhood of RT #1 [167, 3085] RVT_N RVT-GII GIIM rve_2 PHA02517 Feature: gene Location: 167-1702 bp Feature: RT Description: RVT_N Location: 239-482 bp Feature: RT Description: RVT_N Location: 23 9-482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527-1187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527-1187 bp Feature: domain Description: GIIM Note: maturase Location: 1238-1475 bp Feature: domain Description: GIIM Note: maturase Location: 123 8-1475 bp Feature: domain Description: rve_2 Location: 1619-1694 bp Feature: domain Description: rve_2 Location: 1619-1694 bp Feature: gene Location: 2228-3085 bp Feature: domain Description: PHA02517 Location: 2516-3065 bp Feature: domain Description: PHA02517 Location: 2516-3 065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JABAIX010000007.1 Clostridium saccharobutylicum strain DJ167 NODE_7_length_202406_cov_48.112796, whole genome shotgun sequence (202406 bp)
Overview 1 RT 1: 76735-85453 bp Neighborhood of RT #1 [76735, 85453] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Feature: gene Location: 76735-77262 bp Feature: domain Description: Sig70_famx3 Location: 76741-77224 bp Feature: domain Description: Sig70_famx3 Location: 7674 1-77224 bp Feature: gene Location: 77481-78506 bp Feature: domain Description: DUF1835 Location: 77496-77865 bp Feature: domain Description: DUF1835 Location: 774 96-77865 bp Feature: domain Description: DUF3658 Location: 77955-78267 bp Feature: domain Description: DUF3658 Location: 77955-78267 bp Feature: gene Location: 79094-80599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79730-80372 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79730-80372 bp Feature: gene Location: 80596-82404 bp Feature: gene Location: 82406-85453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-Retrons