myRT

myRT report for GCA_014231195.1_ASM1423119v1

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Seq: JABAJJ010000021.1 Clostridium saccharobutylicum strain DJ350 NODE_21_length_81662_cov_29.463713, whole genome shotgun sequence (81662 bp)
Overview 1 RT 1: 55746-58908 bp Neighborhood of RT #1 [55746, 58946] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 55746-55880 bp Feature: gene Location: 56348-56755 bp Feature: gene Location: 57189-57827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57525-57708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57525-57708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57711-57816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5771 1 -5781 6 bp Feature: gene Location: 58298-58648 bp Feature: gene Location: 58740-58946 bp Feature: domain Description: DDE_Tnp_1 Location: 58770-58908 bp Feature: domain Description: DDE_Tnp_1 Location: 58770-58908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JABAJJ010000003.1 Clostridium saccharobutylicum strain DJ350 NODE_3_length_228471_cov_30.840298, whole genome shotgun sequence (228471 bp)
Overview 1 RT 1: 76735-85453 bp Neighborhood of RT #1 [76735, 85453] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Feature: gene Location: 76735-77262 bp Feature: domain Description: Sig70_famx3 Location: 76741-77224 bp Feature: domain Description: Sig70_famx3 Location: 76741-772 2 4 bp Feature: gene Location: 77481-78506 bp Feature: domain Description: DUF1835 Location: 77496-77865 bp Feature: domain Description: DUF1835 Location: 77496-77865 bp Feature: domain Description: DUF3658 Location: 77955-78267 bp Feature: domain Description: DUF3658 Location: 77955-782 67 bp Feature: gene Location: 79094-80599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79730-80372 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79730-80372 bp Feature: gene Location: 80596-82404 bp Feature: gene Location: 82406-85453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-Retrons

Seq: JABAJJ010000041.1 Clostridium saccharobutylicum strain DJ350 NODE_41_length_46864_cov_28.567679, whole genome shotgun sequence (46864 bp)
Overview 1 RT 1: 2723-10632 bp Neighborhood of RT #1 [2723, 10632] UvrD UvrD RVT-Retrons Enpp Feature: gene Location: 2723-5290 bp Feature: domain Description: UvrD Location: 3245-4373 bp Feature: domain Description: UvrD Location: 3 245-43 73 bp Feature: domain Description: UvrD Location: 4550-4790 bp Feature: domain Description: UvrD Location: 4550-4790 bp Feature: gene Location: 5576-6583 bp Feature: gene Location: 6795-7919 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7011-7569 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7011-7569 bp Feature: gene Location: 8221-9525 bp Feature: domain Description: Enpp Location: 8239-9475 bp Feature: domain Description: Enpp Location: 823 9-9475 bp Feature: gene Location: 10096-10632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018)

Seq: JABAJJ010000089.1 Clostridium saccharobutylicum strain DJ350 NODE_89_length_3108_cov_67.043220, whole genome shotgun sequence (3108 bp)
Overview 1 RT 1: 66-2934 bp Neighborhood of RT #1 [66, 2942] PHA02517 RVT_N RVT-GII GIIM rve_2 Feature: gene Location: 66-881 bp Feature: domain Description: PHA02517 Location: 312-861 bp Feature: domain Description: PHA02517 Location: 312-861 bp Feature: gene Location: 1407-2942 bp Feature: RT Description: RVT_N Location: 1479-1722 bp Feature: RT Description: RVT_N Location: 14 79-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767-24 27 bp Feature: domain Description: GIIM Note: maturase Location: 2478-2715 bp Feature: domain Description: GIIM Note: maturase Location: 24 78-2715 bp Feature: domain Description: rve_2 Location: 2859-2934 bp Feature: domain Description: rve_2 Location: 2859-2934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed)