myRT

myRT report for GCA_014231305.1_ASM1423130v1

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Seq: JAARZR010000015.1 Listeria booriae strain FSL L7-0058 NODE_15_length_67674_cov_34.017203, whole genome shotgun sequence (67674 bp)
Overview 1 RT 1: 2504-10176 bp Neighborhood of RT #1 [2504, 10178] SSL2 RVT-Retrons AAA_15 AAA_15 TOPRIM_OLD COG5620 Feature: gene Location: 2504-2656 bp Feature: gene Location: 2885-5935 bp Feature: domain Description: SSL2 Location: 3047-4157 bp Feature: domain Description: SSL2 Location: 3047-41 57 bp Feature: gene Location: 6362-7405 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6482-7040 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6482-7040 bp Feature: gene Location: 7631-9592 bp Feature: domain Description: AAA_15 Location: 7634-7949 bp Feature: domain Description: AAA_1 5 Location: 7634-7949 bp Feature: domain Description: AAA_15 Location: 8174-8540 bp Feature: domain Description: AAA_1 5 Location: 81 74-8540 bp Feature: domain Description: TOPRIM_OLD Location: 8675-8903 bp Feature: domain Description: TOPRIM_OLD Location: 8675-8903 bp Feature: gene Location: 9630-10178 bp Feature: domain Description: COG5620 Location: 9657-10176 bp Feature: domain Description: COG5620 Location: 9657-1 01 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSL2 (COG1061), RVT-Retrons, AAA_15 (pfam13175), TOPRIM_OLD (cd01026), COG5620 (Uncharacterized protein )

Seq: JAARZR010000005.1 Listeria booriae strain FSL L7-0058 NODE_5_length_288410_cov_36.569867, whole genome shotgun sequence (288410 bp)
Overview 1 RT 1: 48565-58648 bp Neighborhood of RT #1 [48565, 58650] TIGR00010 COG4932 COG4932 SpaA COG4932 TQ TQ TQ TQ COG4932 RVT-GII GIIM PRK12267 Feature: gene Location: 48565-49332 bp Feature: domain Description: TIGR00010 Location: 48571-49324 bp Feature: domain Description: TIGR00010 Location: 48571-4932 4 bp Feature: gene Location: 49477-54636 bp Feature: domain Description: COG4932 Location: 49579-49918 bp Feature: domain Description: COG4932 Location: 49579-49918 bp Feature: domain Description: COG4932 Location: 50176-51481 bp Feature: domain Description: COG4932 Location: 50176-51481 bp Feature: domain Description: SpaA Location: 51742-51946 bp Feature: domain Description: SpaA Location: 51742 -51946 bp Feature: domain Description: COG4932 Location: 52117-52573 bp Feature: domain Description: COG4932 Location: 52 117-52 573 bp Feature: domain Description: TQ Location: 52597-52945 bp Feature: domain Description: TQ Location: 52 597-52 945 bp Feature: domain Description: TQ Location: 52957-53308 bp Feature: domain Description: TQ Location: 52 957-53308 bp Feature: domain Description: TQ Location: 53320-53677 bp Feature: domain Description: TQ Location: 5332 0-53677 bp Feature: domain Description: TQ Location: 53686-54043 bp Feature: domain Description: TQ Location: 53686-54043 bp Feature: domain Description: COG4932 Location: 54100-54634 bp Feature: domain Description: COG4932 Location: 54100-54634 bp Feature: gene Location: 54840-56054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54981-55602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54981-55602 bp Feature: domain Description: GIIM Note: maturase Location: 55665-55884 bp Feature: domain Description: GIIM Note: maturase Location: 55665-55884 bp Feature: gene Location: 56097-56429 bp Feature: gene Location: 56653-58650 bp Feature: domain Description: PRK12267 Location: 56665-58648 bp Feature: domain Description: PRK12 2 67 Location: 56665-58648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR00010 (hydrolase, TatD family), COG4932 (Uncharacterized surface anchored protein ), SpaA (pfam17802), TQ (pfam18202), RVT-GII, GIIM (pfam08388), PRK12267 (methionyl-tRNA synthetase; Reviewed)