myRT

myRT report for GCA_014235305.1_ASM1423530v1

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Seq: JACJGU010000010.1 Pseudomonas aeruginosa strain PA0750 NODE_10_length_210198_cov_130.312, whole genome shotgun sequence (210198 bp)
Overview 1 RT 1: 75293-79672 bp Neighborhood of RT #1 [75293, 79672] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 75293-76120 bp Feature: domain Description: ABC_phnC Location: 75323-76037 bp Feature: domain Description: ABC_phnC Location: 75323-76037 bp Feature: gene Location: 76463-77104 bp Feature: domain Description: DUF772 Location: 76613-76808 bp Feature: domain Description: DUF772 Location: 7661 3-76808 bp Feature: gene Location: 77493-78761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77706-78363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77706-78363 bp Feature: domain Description: GIIM Note: maturase Location: 78441-78663 bp Feature: domain Description: GIIM Note: maturase Location: 78441 -78663 bp Feature: gene Location: 78911-79309 bp Feature: gene Location: 79493-79672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JACJGU010000013.1 Pseudomonas aeruginosa strain PA0750 NODE_13_length_202693_cov_100.955, whole genome shotgun sequence (202693 bp)
Overview 1 RT 1: 40963-43986 bp Neighborhood of RT #1 [40963, 44000] DUF1566 Avd_like RVT-DGRs PHA01516 Feature: gene Location: 40963-41547 bp Feature: domain Description: DUF1566 Location: 41245-41533 bp Feature: domain Description: DUF1566 Location: 412 45-41533 bp Feature: gene Location: 41586-41942 bp Feature: domain Description: Avd_like Location: 41613-41916 bp Feature: domain Description: Avd_like Location: 41613-41916 bp Feature: gene Location: 42215-43354 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42392-43076 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42 392 -43076 bp Feature: gene Location: 43377-43682 bp Feature: gene Location: 43716-44000 bp Feature: domain Description: PHA01516 Location: 43728-43986 bp Feature: domain Description: PHA01516 Location: 4372 8-43986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, PHA01516 (hypothetical protein)

Seq: JACJGU010000005.1 Pseudomonas aeruginosa strain PA0750 NODE_5_length_405187_cov_141.983, whole genome shotgun sequence (405187 bp)
Overview 1 RT 1: 79587-88457 bp 2 RT 2: 104722-115021 bp Neighborhood of RT #1 [79587, 88465] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [104722, 115032] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 79587-80261 bp Feature: domain Description: NTP_transferase_like_1 Location: 79593-80232 bp Feature: domain Description: NTP_transferase_like_1 Location: 79593 -8023 2 bp Feature: gene Location: 80258-81274 bp Feature: domain Description: COG3178 Location: 80261-81260 bp Feature: domain Description: COG3 178 Location: 80261-81260 bp Feature: gene Location: 82546-84258 bp Feature: RT Description: RVT_N Location: 82603-82846 bp Feature: RT Description: RVT_N Location: 82603 -82846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82891-83527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82891-83 527 bp Feature: domain Description: YkfC Location: 83737-83887 bp Feature: domain Description: YkfC Location: 83 73 7-83 887 bp Feature: domain Description: HNH Note: nucleases Location: 84064-84202 bp Feature: domain Description: HNH Note: nucleases Location: 84064-84202 bp Feature: gene Location: 84391-87192 bp Feature: domain Description: LptD Location: 84586-87178 bp Feature: domain Description: LptD Location: 84586-87178 bp Feature: gene Location: 87251-88465 bp Feature: domain Description: PRK10770 Location: 87263-88457 bp Feature: domain Description: PRK10770 Location: 87263 -88457 bp Feature: gene Location: 104722-106575 bp Feature: domain Description: PRK05658 Location: 104734-106573 bp Feature: domain Description: PRK05658 Location: 10473 4-106573 bp Feature: gene Location: 106682-110419 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 106790-107447 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 106790-107447 bp Feature: domain Description: PRK09776 Location: 107660-108131 bp Feature: domain Description: PRK09776 Location: 107660-10813 1 bp Feature: domain Description: PAS Location: 108188-108713 bp Feature: domain Description: PAS Location: 108188-108713 bp Feature: domain Description: PRK10060 Location: 108722-110369 bp Feature: domain Description: PRK10060 Location: 108722-1103 69 bp Feature: gene Location: 111500-113185 bp Feature: RT Description: RVT_N Location: 111557-111797 bp Feature: RT Description: RVT_N Location: 111557-111797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111845-112481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111845-112481 bp Feature: domain Description: GIIM Note: maturase Location: 112535-112766 bp Feature: domain Description: GIIM Note: maturase Location: 11253 5-112766 bp Feature: domain Description: HNH Note: nucleases Location: 113018-113156 bp Feature: domain Description: HNH Note: nucleases Location: 113 018-113 156 bp Feature: gene Location: 113488-113649 bp Feature: gene Location: 113911-115032 bp Feature: domain Description: COG3177 Location: 113929-115021 bp Feature: domain Description: COG3 177 Location: 113 929-115021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )