myRT

myRT report for GCA_014235365.1_ASM1423536v1

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Seq: JACJGY010000006.1 Pseudomonas aeruginosa strain PA0750 NODE_6_length_378433_cov_128.163, whole genome shotgun sequence (378433 bp)
Overview 1 RT 1: 51173-60026 bp 2 RT 2: 76291-86588 bp Neighborhood of RT #1 [51173, 60034] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76291, 86599] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 51173-51847 bp Feature: domain Description: NTP_transferase_like_1 Location: 51179-51818 bp Feature: domain Description: NTP_transferase_like_1 Location: 51 1 79-51 81 8 bp Feature: gene Location: 51844-52860 bp Feature: domain Description: COG3178 Location: 51847-52846 bp Feature: domain Description: COG31 78 Location: 51 847-52846 bp Feature: gene Location: 54133-55845 bp Feature: RT Description: RVT_N Location: 54190-54433 bp Feature: RT Description: RVT_N Location: 541 90-54433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54478-55114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54478-551 1 4 bp Feature: domain Description: YkfC Location: 55321-55474 bp Feature: domain Description: YkfC Location: 55321 -55474 bp Feature: domain Description: HNH Note: nucleases Location: 55651-55789 bp Feature: domain Description: HNH Note: nucleases Location: 55651 -55789 bp Feature: gene Location: 55978-58761 bp Feature: domain Description: LptD Location: 56173-58747 bp Feature: domain Description: LptD Location: 561 73-58747 bp Feature: gene Location: 58820-60034 bp Feature: domain Description: PRK10770 Location: 58832-60026 bp Feature: domain Description: PRK1 0770 Location: 58832-60026 bp Feature: gene Location: 76291-78144 bp Feature: domain Description: PRK05658 Location: 76303-78142 bp Feature: domain Description: PRK05658 Location: 76303-781 42 bp Feature: gene Location: 78251-81988 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78359-79016 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78359-7901 6 bp Feature: domain Description: PRK09776 Location: 79229-79700 bp Feature: domain Description: PRK09776 Location: 79229-79700 bp Feature: domain Description: PAS Location: 79757-80282 bp Feature: domain Description: PAS Location: 79757-80282 bp Feature: domain Description: PRK10060 Location: 80291-81938 bp Feature: domain Description: PRK1 0060 Location: 80291 -81 938 bp Feature: gene Location: 83069-84754 bp Feature: RT Description: RVT_N Location: 83126-83366 bp Feature: RT Description: RVT_N Location: 831 26-83366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83414-84050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8341 4-84050 bp Feature: domain Description: GIIM Note: maturase Location: 84104-84335 bp Feature: domain Description: GIIM Note: maturase Location: 841 04-84335 bp Feature: domain Description: HNH Note: nucleases Location: 84587-84725 bp Feature: domain Description: HNH Note: nucleases Location: 84587-84725 bp Feature: gene Location: 85082-85219 bp Feature: gene Location: 85478-86599 bp Feature: domain Description: COG3177 Location: 85496-86588 bp Feature: domain Description: COG31 77 Location: 85496-86588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )