myRT

myRT report for GCA_014235685.1_ASM1423568v1

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Seq: JACJHN010000034.1 Escherichia coli strain EcPF5 NODE_34_length_12172_cov_203.407, whole genome shotgun sequence (12172 bp)
Overview 1 RT 1: 6393-11463 bp Neighborhood of RT #1 [6393, 11463] PRK15223 AfaD-like RVT-UG4 Feature: gene Location: 6393-9008 bp Feature: domain Description: PRK15223 Location: 6474-9003 bp Feature: domain Description: PRK1 5223 Location: 6474-9003 bp Feature: gene Location: 9023-9472 bp Feature: domain Description: AfaD-like Location: 9107-9452 bp Feature: domain Description: AfaD-like Location: 91 07-9452 bp Feature: gene Location: 9664-10458 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 9967-10411 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 9967-1 041 1 bp Feature: gene Location: 10475-10990 bp Feature: gene Location: 11098-11463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15223 (fimbrial biogenesis outer membrane usher protein), AfaD-like (cd18776), RVT-UG4

Seq: JACJHN010000071.1 Escherichia coli strain EcPF5 NODE_71_length_1947_cov_543.932, whole genome shotgun sequence (1947 bp)
Overview 1 RT 1: 1-1726 bp Neighborhood of RT #1 [1, 1800] RVT-GII GIIM Feature: gene Location: 1-141 bp Feature: gene Location: 182-532 bp Feature: gene Location: 559-1800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766-1423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766-142 3 bp Feature: domain Description: GIIM Note: maturase Location: 1504-1726 bp Feature: domain Description: GIIM Note: maturase Location: 1504-172 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)