myRT

myRT report for GCA_014235825.1_ASM1423582v1

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Seq: JACJUH010000015.1 Escherichia coli strain EC171 Scaffold15, whole genome shotgun sequence (131699 bp)
Overview 1 RT 1: 43454-53749 bp Neighborhood of RT #1 [43454, 53766] Resolvase RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 43454-44119 bp Feature: domain Description: Resolvase Location: 43475-43892 bp Feature: domain Description: Resolvase Location: 43475-43892 bp Feature: gene Location: 44168-44350 bp Feature: gene Location: 44387-46093 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44537-45134 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44537-451 34 bp Feature: gene Location: 46230-46727 bp Feature: gene Location: 46967-47428 bp Feature: domain Description: HTH_XRE Location: 46997-47165 bp Feature: domain Description: HTH_XRE Location: 46997-471 65 bp Feature: gene Location: 47459-48640 bp Feature: domain Description: DUF4062 Location: 47474-47801 bp Feature: domain Description: DUF4062 Location: 47474-47801 bp Feature: gene Location: 49349-50533 bp Feature: domain Description: PRK09692 Location: 49355-50510 bp Feature: domain Description: PRK09692 Location: 49355-5051 0 bp Feature: gene Location: 50526-52154 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50934-51363 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50934-51 363 bp Feature: gene Location: 52151-52891 bp Feature: gene Location: 53194-53766 bp Feature: domain Description: Psu Location: 53212-53749 bp Feature: domain Description: Psu Location: 5321 2-53749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: JACJUH010000044.1 Escherichia coli strain EC171 Scaffold44, whole genome shotgun sequence (29159 bp)
Overview 1 RT 1: 22482-26464 bp Neighborhood of RT #1 [22482, 26490] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 22482-23513 bp Feature: domain Description: Asparaginase_2 Location: 22572-23505 bp Feature: domain Description: Asparaginase_2 Location: 2 2 572 -2 3505 bp Feature: gene Location: 23840-23989 bp Feature: gene Location: 24037-24483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24343-24445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4343-2 4445 bp Feature: gene Location: 24705-25076 bp Feature: gene Location: 25129-26490 bp Feature: domain Description: DcuC Location: 25132-26464 bp Feature: domain Description: DcuC Location: 2 5132 -2 6464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: JACJUH010000052.1 Escherichia coli strain EC171 Scaffold52, whole genome shotgun sequence (13937 bp)
Overview 1 RT 1: 226-3542 bp Neighborhood of RT #1 [226, 3607] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 226-444 bp Feature: gene Location: 648-1094 bp Feature: domain Description: PHA02517 Location: 651-1092 bp Feature: domain Description: PHA02517 Location: 651-1092 bp Feature: gene Location: 1211-2734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1484-2216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1484-2216 bp Feature: domain Description: GIIM Note: maturase Location: 2291-2489 bp Feature: domain Description: GIIM Note: maturase Location: 2291-2489 bp Feature: gene Location: 2688-3113 bp Feature: gene Location: 3326-3607 bp Feature: domain Description: PHA02517 Location: 3332-3542 bp Feature: domain Description: PHA02517 Location: 3 3 3 2-3 542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)