myRT

myRT report for GCA_014235835.1_ASM1423583v1

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Seq: JACJVA010000022.1 Klebsiella pneumoniae strain 163109936 contig_seqid22, whole genome shotgun sequence (57167 bp)
Overview 1 RT 1: 541-5424 bp Neighborhood of RT #1 [541, 5426] umuC RVT-UG11 PRK09951 PRK15110 Feature: gene Location: 541-1806 bp Feature: domain Description: umuC Location: 544-1804 bp Feature: domain Description: umuC Location: 544-1 804 bp Feature: gene Location: 2031-2219 bp Feature: gene Location: 2479-3387 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2752-3208 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 2752-3208 bp Feature: gene Location: 3588-4256 bp Feature: domain Description: PRK09951 Location: 3591-4254 bp Feature: domain Description: PRK09951 Location: 3591 -4254 bp Feature: gene Location: 4461-5426 bp Feature: domain Description: PRK15110 Location: 4464-5424 bp Feature: domain Description: PRK1 51 1 0 Location: 4464-5424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB)

Seq: JACJVA010000025.1 Klebsiella pneumoniae strain 163109936 contig_seqid25, whole genome shotgun sequence (43434 bp)
Overview 1 RT 1: 37223-42723 bp Neighborhood of RT #1 [37223, 42723] XRE RVT-UG1 Feature: gene Location: 37223-38020 bp Feature: domain Description: XRE Location: 37226-37409 bp Feature: domain Description: XRE Location: 372 2 6-37409 bp Feature: gene Location: 38319-38753 bp Feature: gene Location: 38762-42460 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 39374-39884 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 39374-39884 bp Feature: gene Location: 42523-42723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), RVT-UG1

Seq: JACJVA010000046.1 Klebsiella pneumoniae strain 163109936 contig_seqid46, whole genome shotgun sequence (13872 bp)
Overview 1 RT 1: 2861-6464 bp Neighborhood of RT #1 [2861, 6589] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2861-3118 bp Feature: gene Location: 3149-3424 bp Feature: gene Location: 3998-5665 bp Feature: domain Description: RVT_N Location: 4046-4283 bp Feature: domain Description: RVT_N Location: 4046-4283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4334-4976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 3 4-4976 bp Feature: domain Description: GIIM Note: maturase Location: 5027-5261 bp Feature: domain Description: GIIM Note: maturase Location: 5027-5261 bp Feature: domain Description: HNHc Note: nucleases Location: 5471-5630 bp Feature: domain Description: HNHc Note: nucleases Location: 5471-563 0 bp Feature: gene Location: 5979-6170 bp Feature: gene Location: 6167-6589 bp Feature: domain Description: DUF1380 Location: 6170-6464 bp Feature: domain Description: DUF13 80 Location: 6170-6464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: JACJVA010000075.1 Klebsiella pneumoniae strain 163109936 contig_seqid75, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 60-1892 bp Neighborhood of RT #1 [60, 1892] RVT-GII Feature: gene Location: 60-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 65-1155 bp Feature: gene Location: 1701-1892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII