myRT

myRT report for GCA_014236655.1_ASM1423665v1

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Seq: JACMYG010000044.1 Pseudomonas sp. MBT-1 200706PS37_contig_44, whole genome shotgun sequence (32871 bp)
Overview 1 RT 1: 28610-32521 bp Neighborhood of RT #1 [28610, 32521] TrkG MvaT_DBD RVT-GII Feature: gene Location: 28610-30064 bp Feature: domain Description: TrkG Location: 28631-30059 bp Feature: domain Description: TrkG Location: 28631 -30059 bp Feature: gene Location: 30209-30574 bp Feature: domain Description: MvaT_DBD Location: 30446-30569 bp Feature: domain Description: MvaT_DBD Location: 30446-30569 bp Feature: gene Location: 30829-31620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31087-31420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 087-31 420 bp Feature: gene Location: 31657-32160 bp Feature: gene Location: 32108-32521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrkG (COG0168), MvaT_DBD (cl40688), RVT-GII

Seq: JACMYG010000067.1 Pseudomonas sp. MBT-1 200706PS37_contig_67, whole genome shotgun sequence (4041 bp)
Overview 1 RT 1: 443-3924 bp Neighborhood of RT #1 [443, 3924] Resolvase Recombinase Zn_ribbon_recom RVT_N RVT-GII Feature: gene Location: 443-658 bp Feature: gene Location: 699-2591 bp Feature: domain Description: Resolvase Location: 720-1158 bp Feature: domain Description: Resolvase Location: 72 0-1158 bp Feature: domain Description: Recombinase Location: 1254-1611 bp Feature: domain Description: Recombinase Location: 12 54-1611 bp Feature: domain Description: Zn_ribbon_recom Location: 1650-1854 bp Feature: domain Description: Zn_ribbon_recom Location: 1650-1854 bp Feature: gene Location: 2886-3653 bp Feature: RT Description: RVT_N Location: 2961-3201 bp Feature: RT Description: RVT_N Location: 2 961-32 01 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3249-3630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 49-3630 bp Feature: gene Location: 3694-3924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: JACMYG010000078.1 Pseudomonas sp. MBT-1 200706PS37_contig_78, whole genome shotgun sequence (1843 bp)
Overview 1 RT 1: 437-1613 bp Neighborhood of RT #1 [437, 1753] RVT-GII GIIM Feature: gene Location: 437-1753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-13 3 4 bp Feature: domain Description: GIIM Note: maturase Location: 1391-1613 bp Feature: domain Description: GIIM Note: maturase Location: 13 91-1613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)