myRT

myRT report for GCA_014237195.1_ASM1423719v1

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Seq: JAAXOL010000134.1 Desulfobacteraceae bacterium isolate Bin5 scaffold_13106, whole genome shotgun sequence (5014 bp)
Overview 1 RT 1: 3005-4511 bp Neighborhood of RT #1 [3005, 4942] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 3005-3889 bp Feature: domain Description: DUF1566 Location: 3488-3875 bp Feature: domain Description: DUF1 566 Location: 3488-3875 bp Feature: gene Location: 4053-4256 bp Feature: domain Description: Avd_like Location: 4080-4245 bp Feature: domain Description: Avd_like Location: 4080-4245 bp Feature: gene Location: 4367-4942 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4373-4511 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4373-451 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: JAAXOL010000094.1 Desulfobacteraceae bacterium isolate Bin5 scaffold_21725, whole genome shotgun sequence (6084 bp)
Overview 1 RT 1: 3031-6081 bp Neighborhood of RT #1 [3031, 6081] integrase_gron integrase_gron RVT-GII GIIM Feature: gene Location: 3031-3939 bp Feature: domain Description: integrase_gron Location: 3100-3277 bp Feature: domain Description: integrase_gron Location: 3100-32 77 bp Feature: domain Description: integrase_gron Location: 3499-3928 bp Feature: domain Description: integrase_gron Location: 3499-392 8 bp Feature: gene Location: 4050-4226 bp Feature: gene Location: 4350-5522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4452-5073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4452 -5073 bp Feature: domain Description: GIIM Note: maturase Location: 5118-5331 bp Feature: domain Description: GIIM Note: maturase Location: 5118-5331 bp Feature: gene Location: 5785-6081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT integrase_gron (TIGR02249), RVT-GII, GIIM (pfam08388)

Seq: JAAXOL010000133.1 Desulfobacteraceae bacterium isolate Bin5 scaffold_3515, whole genome shotgun sequence (26756 bp)
Overview 1 RT 1: 10721-15435 bp Neighborhood of RT #1 [10721, 15470] DUF2784 HigB Pcm RVT-DGRs Na_H_Exchanger CBS_pair_BON_assoc Feature: gene Location: 10721-11209 bp Feature: domain Description: DUF2784 Location: 10781-10901 bp Feature: domain Description: DUF2784 Location: 10781-10901 bp Feature: domain Description: HigB Location: 10937-11207 bp Feature: domain Description: HigB Location: 1093 7-11207 bp Feature: gene Location: 11445-12164 bp Feature: domain Description: Pcm Location: 11565-12162 bp Feature: domain Description: Pcm Location: 11565-12162 bp Feature: gene Location: 12928-13503 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12934-13381 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1293 4-13 3 81 bp Feature: gene Location: 13789-15012 bp Feature: domain Description: Na_H_Exchanger Location: 13849-14983 bp Feature: domain Description: Na_H_Exchanger Location: 13 849-14983 bp Feature: gene Location: 15015-15470 bp Feature: domain Description: CBS_pair_BON_assoc Location: 15042-15435 bp Feature: domain Description: CBS_pair_BON_assoc Location: 15042-1543 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2784 (pfam10861), HigB (COG4680), Pcm (COG2518), RVT-DGRs, Na_H_Exchanger (pfam00999), CBS_pair_BON_assoc (cd04586)

Seq: JAAXOL010000224.1 Desulfobacteraceae bacterium isolate Bin5 scaffold_7412, whole genome shotgun sequence (8081 bp)
Overview 1 RT 1: 3842-7138 bp Neighborhood of RT #1 [3842, 7173] Csx1_III-U Cas_csx3 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 3842-4723 bp Feature: domain Description: Csx1_III-U Location: 4277-4652 bp Feature: domain Description: Csx1_III-U Location: 4 277-4 652 bp Feature: gene Location: 4774-4959 bp Feature: domain Description: Cas_csx3 Location: 4822-4951 bp Feature: domain Description: Cas_csx3 Location: 4 822-4 951 bp Feature: gene Location: 4962-5888 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5163-5760 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5163-5760 bp Feature: gene Location: 5891-6892 bp Feature: domain Description: Cas1_I-II-III Location: 5900-6854 bp Feature: domain Description: Cas1_I-II-III Location: 5900-6854 bp Feature: gene Location: 6898-7173 bp Feature: domain Description: Cas2_I_II_III Location: 6907-7138 bp Feature: domain Description: Cas2_I_II_III Location: 6907-7138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csx1_III-U (cl21570), Cas_csx3 (pfam09620), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)