myRT

myRT report for GCA_014237865.1_ASM1423786v1

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Seq: JACJUU010000001.1 Pusillimonas sp. 7-48 NODE_1_length_528343_cov_66.838971_cov_66.838971, whole genome shotgun sequence (528343 bp)
Overview 1 RT 1: 259518-264315 bp Neighborhood of RT #1 [259518, 264332] Collagen Collagen RVT-DGRs PHA00653 Feature: gene Location: 259518-260588 bp Feature: domain Description: Collagen Location: 259806-259884 bp Feature: domain Description: Collagen Location: 259806-259884 bp Feature: domain Description: Collagen Location: 260043-260160 bp Feature: domain Description: Collagen Location: 260043-2601 60 bp Feature: gene Location: 260604-261029 bp Feature: gene Location: 261026-262282 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 261512-262106 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 261 51 2-2621 06 bp Feature: gene Location: 262161-262535 bp Feature: gene Location: 262548-264332 bp Feature: domain Description: PHA00653 Location: 263316-264315 bp Feature: domain Description: PHA00653 Location: 26331 6-26431 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Collagen (pfam01391), RVT-DGRs, PHA00653 (mtd;major tropism determinant)

Seq: JACJUU010000033.1 Pusillimonas sp. 7-48 NODE_348_length_3283_cov_60.575901_cov_60.575901, whole genome shotgun sequence (3283 bp)
Overview 1 RT 1: 430-3231 bp Neighborhood of RT #1 [430, 3281] RVT-Retrons HTH_Tnp_1 HTH_Tnp_1 Feature: gene Location: 430-2247 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 604-1231 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 604-12 31 bp Feature: gene Location: 2502-2684 bp Feature: gene Location: 2784-3281 bp Feature: domain Description: HTH_Tnp_1 Location: 2832-2994 bp Feature: domain Description: HTH_Tnp_1 Location: 2 832 -2 994 bp Feature: domain Description: HTH_Tnp_1 Location: 3009-3231 bp Feature: domain Description: HTH_Tnp_1 Location: 3009-32 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-Retrons

Seq: JACJUU010000014.1 Pusillimonas sp. 7-48 NODE_62_length_60266_cov_65.031108_cov_65.031108, whole genome shotgun sequence (60266 bp)
Overview 1 RT 1: 33034-36599 bp Neighborhood of RT #1 [33034, 36599] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 33034-33432 bp Feature: domain Description: PHA02517 Location: 33037-33397 bp Feature: domain Description: PHA02517 Location: 3 3 03 7-3 3 3 97 bp Feature: gene Location: 33677-33808 bp Feature: gene Location: 34060-35592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34333-35071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 43 3 3 -3 5071 bp Feature: domain Description: GIIM Note: maturase Location: 35200-35344 bp Feature: domain Description: GIIM Note: maturase Location: 3 5200-3 53 44 bp Feature: gene Location: 35703-36107 bp Feature: domain Description: PHA02517 Location: 35706-36084 bp Feature: domain Description: PHA02517 Location: 3 5706-3 6084 bp Feature: gene Location: 36174-36599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)