myRT

myRT report for GCA_014269395.1_ASM1426939v1

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Seq: JACOGK010000001.1 (132359 bp)
Overview 1 RT 1: 72371-77355 bp Neighborhood of RT #1 [72371, 77393] Phage_portal RVT-GII Intron_maturas2 HNHc Phage_portal Gp49 Feature: gene Location: 72371-73132 bp Feature: gene Location: 73193-73732 bp Feature: domain Description: Phage_portal Location: 73247-73616 bp Feature: domain Description: Phage_portal Location: 73247-7361 6 bp Feature: gene Location: 73787-75586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74054-74867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74054-74867 bp Feature: domain Description: Intron_maturas2 Location: 74936-75248 bp Feature: domain Description: Intron_maturas2 Location: 74936-75248 bp Feature: domain Description: HNHc Note: nucleases Location: 75407-75563 bp Feature: domain Description: HNHc Note: nucleases Location: 75407-75563 bp Feature: gene Location: 76118-76912 bp Feature: domain Description: Phage_portal Location: 76262-76892 bp Feature: domain Description: Phage_portal Location: 76262-76892 bp Feature: gene Location: 77025-77393 bp Feature: domain Description: Gp49 Location: 77133-77355 bp Feature: domain Description: Gp49 Location: 771 33-77355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_portal (pfam04860), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Gp49 (pfam05973)

Seq: JACOGK010000062.1 (5112 bp)
Overview 1 RT 1: 105-4279 bp Neighborhood of RT #1 [105, 4962] DUF4145 RVT-UNC RVT-UG3 RVT-UG8 Feature: gene Location: 105-992 bp Feature: domain Description: DUF4145 Location: 639-885 bp Feature: domain Description: DUF4145 Location: 639-885 bp Feature: gene Location: 1697-2281 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2030-2267 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 030-2 2 67 bp Feature: gene Location: 2286-3140 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2292-2526 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 2 92 -2 52 6 bp Feature: gene Location: 3304-4962 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3841-4279 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3841-42 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4145 (pfam13643), RVT-UG26/RVT-UG3/RVT-UG28/RVT-Retrons(RVT-UNC), RVT-UG3, RVT-UG8

Seq: JACOGK010000025.1 (42212 bp)
Overview 1 RT 1: 29194-33586 bp Neighborhood of RT #1 [29194, 33586] DUF3751 PHA00653 RVT-DGRs Feature: gene Location: 29194-30150 bp Feature: gene Location: 30160-31662 bp Feature: domain Description: DUF3751 Location: 30172-30592 bp Feature: domain Description: DUF3 751 Location: 3 0172-3 0592 bp Feature: domain Description: PHA00653 Location: 30799-31645 bp Feature: domain Description: PHA00653 Location: 3 0799-3 1645 bp Feature: gene Location: 31706-32866 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32207-32792 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 2207-3 2792 bp Feature: gene Location: 33003-33284 bp Feature: gene Location: 33296-33586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3751 (pfam12571), PHA00653 (mtd;major tropism determinant), RVT-DGRs