myRT

myRT report for GCA_014282005.1_ASM1428200v1

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Seq: JACFTD010000089.1 (493 bp)
Overview 1 RT 1: 1-493 bp Neighborhood of RT #1 [1, 492] RVT_N RVT-GII Feature: gene Location: 1-492 bp Feature: domain Description: RVT_N Location: 58-202 bp Feature: domain Description: RVT_N Location: 58-202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACFTD010000102.1 (328 bp)
Overview 1 RT 1: 2-326 bp Neighborhood of RT #1 [2, 325] RVT-GII Feature: gene Location: 2-325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-32 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACFTD010000052.1 (2059 bp)
Overview 1 RT 1: 92-2058 bp Neighborhood of RT #1 [92, 2058] RVT-GII GIIM Feature: gene Location: 92-1408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359-983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 59-983 bp Feature: domain Description: GIIM Note: maturase Location: 1025-1259 bp Feature: domain Description: GIIM Note: maturase Location: 1025-1259 bp Feature: gene Location: 1855-2058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACFTD010000073.1 (821 bp)
Overview 1 RT 1: 2-821 bp Neighborhood of RT #1 [2, 820] RVT_N RVT-GII Feature: gene Location: 2-820 bp Feature: domain Description: RVT_N Location: 59-203 bp Feature: domain Description: RVT_N Location: 59-203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACFTD010000032.1 (13753 bp)
Overview 1 RT 1: 410-5069 bp Neighborhood of RT #1 [410, 5069] DUF3888 RVT_N RVT-GII HNHc Feature: gene Location: 410-862 bp Feature: gene Location: 1007-1420 bp Feature: domain Description: DUF3888 Location: 1118-1400 bp Feature: domain Description: DUF3888 Location: 1118-1400 bp Feature: gene Location: 2247-4010 bp Feature: domain Description: RVT_N Location: 2289-2433 bp Feature: domain Description: RVT_N Location: 2289-2433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2505-3204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 05 -3204 bp Feature: domain Description: HNHc Note: nucleases Location: 3759-3897 bp Feature: domain Description: HNHc Note: nucleases Location: 375 9-3897 bp Feature: gene Location: 4292-4696 bp Feature: gene Location: 4812-5069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3888 (pfam13027), RVT_N (pfam13655), RVT-GII, HNHc (smart00507)

Seq: JACFTD010000030.1 (14058 bp)
Overview 1 RT 1: 1389-5348 bp Neighborhood of RT #1 [1389, 5348] INT_RitB_C_like xerS INT_RitC_C_like RVT-GII Feature: gene Location: 1389-2423 bp Feature: domain Description: INT_RitB_C_like Location: 1752-2355 bp Feature: domain Description: INT_RitB_C_like Location: 1752-2355 bp Feature: gene Location: 2416-3426 bp Feature: domain Description: xerS Location: 2446-2656 bp Feature: domain Description: xerS Location: 2446 -26 56 bp Feature: domain Description: INT_RitC_C_like Location: 2791-3328 bp Feature: domain Description: INT_RitC_C_like Location: 2791-3328 bp Feature: gene Location: 3541-4035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3799-4021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3799-4021 bp Feature: gene Location: 4241-4447 bp Feature: gene Location: 4869-5348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), xerS (PRK05084), INT_RitC_C_like (cd01182), RVT-GII

Seq: JACFTD010000065.1 (1056 bp)
Overview 1 RT 1: 98-941 bp Neighborhood of RT #1 [98, 1054] RVT-GII HNHc Feature: gene Location: 98-1054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104-248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104-248 bp Feature: domain Description: HNHc Note: nucleases Location: 803-941 bp Feature: domain Description: HNHc Note: nucleases Location: 803-941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JACFTD010000015.1 (79225 bp)
Overview 1 RT 1: 77689-79110 bp Neighborhood of RT #1 [77689, 79223] RVT-GII HNHc Feature: gene Location: 77689-78072 bp Feature: gene Location: 78074-78214 bp Feature: gene Location: 78267-79223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78273-78417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78 273-78 417 bp Feature: domain Description: HNHc Note: nucleases Location: 78972-79110 bp Feature: domain Description: HNHc Note: nucleases Location: 78 972-79110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JACFTD010000059.1 (1457 bp)
Overview 1 RT 1: 2-1457 bp Neighborhood of RT #1 [2, 1456] RVT_N RVT-GII Feature: gene Location: 2-154 bp Feature: gene Location: 599-1456 bp Feature: domain Description: RVT_N Location: 647-893 bp Feature: domain Description: RVT_N Location: 647-89 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947-1457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 47-1457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACFTD010000018.1 (66187 bp)
Overview 1 RT 1: 62489-65866 bp Neighborhood of RT #1 [62489, 66015] MqsR_toxin CxxCG_CxxCG_HTH GepA RVT-GII GIIM Feature: gene Location: 62489-62899 bp Feature: domain Description: MqsR_toxin Location: 62597-62858 bp Feature: domain Description: MqsR_toxin Location: 62597-62858 bp Feature: gene Location: 62930-63988 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 62954-63296 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 62954-63296 bp Feature: domain Description: GepA Location: 63530-63944 bp Feature: domain Description: GepA Location: 63530-63944 bp Feature: gene Location: 64699-66015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64966-65590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64966-65590 bp Feature: domain Description: GIIM Note: maturase Location: 65632-65866 bp Feature: domain Description: GIIM Note: maturase Location: 65632-65866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MqsR_toxin (pfam15723), CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600), RVT-GII, GIIM (pfam08388)

Seq: JACFTD010000054.1 (1870 bp)
Overview 1 RT 1: 76-1846 bp Neighborhood of RT #1 [76, 1846] RVT-GII GIIM Feature: gene Location: 76-1320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280-934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280-934 bp Feature: domain Description: GIIM Note: maturase Location: 1015-1234 bp Feature: domain Description: GIIM Note: maturase Location: 1015-1234 bp Feature: gene Location: 1685-1846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACFTD010000002.1 (603822 bp)
Overview 1 RT 1: 393879-396381 bp Neighborhood of RT #1 [393879, 396917] phg_phg_phg_TIGR02220 RVT-GII GIIM HTH_36 Feature: gene Location: 393879-394073 bp Feature: domain Description: phg_phg_phg_TIGR02220 Location: 393930-394071 bp Feature: domain Description: phg_phg_phg_TIGR02220 Location: 393930-394071 bp Feature: gene Location: 394284-394463 bp Feature: gene Location: 394613-395875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394811-395429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394811-395429 bp Feature: domain Description: GIIM Note: maturase Location: 395480-395690 bp Feature: domain Description: GIIM Note: maturase Location: 395480-395690 bp Feature: gene Location: 395927-396109 bp Feature: gene Location: 396129-396917 bp Feature: domain Description: HTH_36 Location: 396228-396381 bp Feature: domain Description: HTH_36 Location: 396228-396381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phg_phg_phg_TIGR02220, RVT-GII, GIIM (pfam08388), HTH_36 (pfam13730)

Seq: JACFTD010000068.1 (1018 bp)
Overview 1 RT 1: 3-816 bp Neighborhood of RT #1 [3, 911] RVT-GII GIIM HNHc Feature: gene Location: 3-911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-147 bp Feature: domain Description: GIIM Note: maturase Location: 210-444 bp Feature: domain Description: GIIM Note: maturase Location: 210-444 bp Feature: domain Description: HNHc Note: nucleases Location: 645-816 bp Feature: domain Description: HNHc Note: nucleases Location: 645-816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACFTD010000017.1 (66830 bp)
Overview 1 RT 1: 63832-65916 bp Neighborhood of RT #1 [63832, 66734] RVT-GII Feature: gene Location: 63832-64110 bp Feature: gene Location: 64409-64753 bp Feature: gene Location: 64959-66734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65217-65916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65217-65916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACFTD010000006.1 (259949 bp)
Overview 1 RT 1: 16689-22078 bp Neighborhood of RT #1 [16689, 22107] M20_Acy1 GlnA RVT-GII RVT-GII GIIM GDH COG3981 Feature: gene Location: 16689-17858 bp Feature: domain Description: M20_Acy1 Location: 16716-17823 bp Feature: domain Description: M20_Acy1 Location: 16716-17823 bp Feature: gene Location: 17855-19222 bp Feature: domain Description: GlnA Location: 17891-19214 bp Feature: domain Description: GlnA Location: 17891-19214 bp Feature: gene Location: 19703-20194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20021-20183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20021-20183 bp Feature: gene Location: 20228-21088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20231-20636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20231-20636 bp Feature: domain Description: GIIM Note: maturase Location: 20696-20897 bp Feature: domain Description: GIIM Note: maturase Location: 20696-20897 bp Feature: gene Location: 21313-21465 bp Feature: domain Description: GDH Location: 21316-21463 bp Feature: domain Description: GDH Location: 21316-21463 bp Feature: gene Location: 21775-22107 bp Feature: domain Description: COG3981 Location: 21784-22078 bp Feature: domain Description: COG3981 Location: 21784-22078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M20_Acy1 (cd03886), GlnA (TIGR00653), RVT-GII, GIIM (pfam08388), GDH (cd05301), COG3981 (Predicted acetyltransferase )