myRT

myRT report for GCA_014283905.1_ASM1428390v1

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Seq: JACOMN010000009.1 (159416 bp)
Overview 1 RT 1: 2-3616 bp Neighborhood of RT #1 [2, 3616] RVT-UG5 PRK09692 Feature: gene Location: 2-1927 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 473-986 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 473-986 bp Feature: gene Location: 1986-3260 bp Feature: domain Description: PRK09692 Location: 1995-3195 bp Feature: domain Description: PRK09692 Location: 1 995-31 95 bp Feature: gene Location: 3428-3616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, PRK09692 (Integrase; provisional)

Seq: JACOMN010000002.1 (832664 bp)
Overview 1 RT 1: 440954-445735 bp Neighborhood of RT #1 [440954, 445785] NdpA PRK09678 RVT-UG12 D COG3499 Feature: gene Location: 440954-441958 bp Feature: domain Description: NdpA Location: 440957-441947 bp Feature: domain Description: NdpA Location: 440957-441947 bp Feature: gene Location: 442109-442423 bp Feature: domain Description: PRK09678 Location: 442208-442409 bp Feature: domain Description: PRK09678 Location: 442 2 08-442 409 bp Feature: gene Location: 442439-444175 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 442799-443258 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 442 799-4432 58 bp Feature: gene Location: 444194-445300 bp Feature: domain Description: D Location: 444218-445289 bp Feature: domain Description: D Location: 4442 18-4452 89 bp Feature: gene Location: 445297-445785 bp Feature: domain Description: COG3499 Location: 445306-445735 bp Feature: domain Description: COG3499 Location: 445306-445735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NdpA (COG3081), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG12, D (PHA02561), COG3499 (Phage protein U )

Seq: JACOMN010000004.1 (321396 bp)
Overview 1 RT 1: 1-4299 bp Neighborhood of RT #1 [1, 4307] COG4584 RVT-GII GIIM PHA02517 Feature: gene Location: 1-360 bp Feature: domain Description: COG4584 Location: 4-361 bp Feature: domain Description: COG4584 Location: 4-3 61 bp Feature: gene Location: 882-2405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1155-1887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1155-1887 bp Feature: domain Description: GIIM Note: maturase Location: 1962-2160 bp Feature: domain Description: GIIM Note: maturase Location: 1962-2160 bp Feature: gene Location: 2699-3136 bp Feature: gene Location: 3495-4307 bp Feature: domain Description: PHA02517 Location: 3501-4299 bp Feature: domain Description: PHA02517 Location: 3 501-4299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)