myRT

myRT report for GCA_014287355.1_ASM1428735v1

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Seq: JACOPE010000001.1 (3444226 bp)
Overview 1 RT 1: 391426-394697 bp 2 RT 2: 407384-418576 bp 3 RT 3: 2833171-2837835 bp 4 RT 4: 2877583-2880928 bp 5 RT 5: 3401735-3407117 bp Neighborhood of RT #1 [391426, 394697] PepE RVT-GII Abhydrolase_6 Neighborhood of RT #2 [407384, 418587] IscR HDGYP SpaA CollagenBindB SpaA RVT-GII HTH_30 IscR HDGYP Neighborhood of RT #3 [2833171, 2838188] NP-I_spr0068 COG3981 RVT-Retrons EcoRII-C Neighborhood of RT #4 [2877583, 2880942] COG2865 COG2865 RVT-UG12 HTH_26 Nudix_Hydrolase_34 Neighborhood of RT #5 [3401735, 3407137] Maff2 VirD4 RVT-GII VirD4 DUF3801 Feature: gene Location: 391426-392028 bp Feature: domain Description: PepE Location: 391459-392017 bp Feature: domain Description: PepE Location: 391 459-39201 7 bp Feature: gene Location: 392191-392436 bp Feature: gene Location: 392526-393821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392781-393471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392781 -393471 bp Feature: gene Location: 393957-394244 bp Feature: domain Description: Abhydrolase_6 Location: 393999-394233 bp Feature: domain Description: Abhydrolase_6 Location: 393999-394233 bp Feature: gene Location: 394272-394697 bp Feature: gene Location: 407384-408832 bp Feature: domain Description: IscR Location: 407387-407786 bp Feature: domain Description: IscR Location: 407387-407786 bp Feature: domain Description: HDGYP Location: 408005-408803 bp Feature: domain Description: HDGYP Location: 408005-408803 bp Feature: gene Location: 408845-414976 bp Feature: domain Description: SpaA Location: 413306-413501 bp Feature: domain Description: SpaA Location: 41 3306-41 3501 bp Feature: domain Description: CollagenBindB Location: 413675-413903 bp Feature: domain Description: CollagenBindB Location: 41 3675-41 3903 bp Feature: domain Description: SpaA Location: 414092-414347 bp Feature: domain Description: SpaA Location: 41 4092-41 4347 bp Feature: gene Location: 415633-416322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415843-416062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 5843-41 6062 bp Feature: domain Description: HTH_30 Location: 416125-416281 bp Feature: domain Description: HTH_30 Location: 41 61 25-41 6281 bp Feature: gene Location: 416675-416995 bp Feature: gene Location: 417100-418587 bp Feature: domain Description: IscR Location: 417130-417532 bp Feature: domain Description: IscR Location: 41 71 30-41 7532 bp Feature: domain Description: HDGYP Location: 417832-418576 bp Feature: domain Description: HDGYP Location: 41 7832-41 8576 bp Feature: gene Location: 2833171-2833938 bp Feature: domain Description: NP-I_spr0068 Location: 2833267-2833921 bp Feature: domain Description: NP-I_spr0068 Location: 2833267-2833921 bp Feature: gene Location: 2833972-2834505 bp Feature: domain Description: COG3981 Location: 2833987-2834497 bp Feature: domain Description: COG3981 Location: 2833987-2834497 bp Feature: gene Location: 2834850-2835887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2835009-2835567 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2835009-2835567 bp Feature: gene Location: 2836039-2836959 bp Feature: gene Location: 2837028-2838188 bp Feature: domain Description: EcoRII-C Location: 2837565-2837835 bp Feature: domain Description: EcoRII-C Location: 2837565-2837835 bp Feature: gene Location: 2877583-2878128 bp Feature: domain Description: COG2865 Location: 2877610-2878048 bp Feature: domain Description: COG2865 Location: 287761 0-2878048 bp Feature: gene Location: 2878148-2878351 bp Feature: domain Description: COG2865 Location: 2878172-2878340 bp Feature: domain Description: COG2865 Location: 28781 72-2878340 bp Feature: gene Location: 2878447-2880177 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2878984-2879401 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 2878984-2879401 bp Feature: gene Location: 2880209-2880391 bp Feature: gene Location: 2880403-2880942 bp Feature: domain Description: HTH_26 Location: 2880451-2880631 bp Feature: domain Description: HTH_26 Location: 2880451 -2880631 bp Feature: domain Description: Nudix_Hydrolase_34 Location: 2880724-2880928 bp Feature: domain Description: Nudix_Hydrolase_34 Location: 2880724-2880928 bp Feature: gene Location: 3401735-3401875 bp Feature: domain Description: Maff2 Location: 3401738-3401864 bp Feature: domain Description: Maff2 Location: 3401 738-3401 864 bp Feature: gene Location: 3402003-3403061 bp Feature: domain Description: VirD4 Location: 3402138-3402939 bp Feature: domain Description: VirD4 Location: 34021 38-3402939 bp Feature: gene Location: 3403208-3405115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3403538-3404282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3403538-3404282 bp Feature: gene Location: 3405774-3406574 bp Feature: domain Description: VirD4 Location: 3406026-3406536 bp Feature: domain Description: VirD4 Location: 3406026-3406536 bp Feature: gene Location: 3406574-3407137 bp Feature: domain Description: DUF3801 Location: 3406766-3407117 bp Feature: domain Description: DUF3801 Location: 3406766-34071 1 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PepE (COG3340), RVT-GII, Abhydrolase_6 (pfam12697), IscR (TIGR02010), HDGYP (COG2206), SpaA (pfam17802), CollagenBindB (cl15753), HTH_30 (pfam13556), NP-I_spr0068 (cd09007), COG3981 (Predicted acetyltransferase )
RVT-Retrons, EcoRII-C (pfam09019), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG12, HTH_26 (pfam13443), Nudix_Hydrolase_34 (cd04693), Maff2 (pfam12750), VirD4 (COG3505), DUF3801 (pfam12687)