myRT

myRT report for GCA_014287385.1_ASM1428738v1

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Seq: JACOOE010000036.1 (2429 bp)
Overview 1 RT 1: 1-2388 bp Neighborhood of RT #1 [1, 2388] RVT_N RVT-GII GIIM Feature: gene Location: 1-135 bp Feature: gene Location: 138-1793 bp Feature: domain Description: RVT_N Location: 195-432 bp Feature: domain Description: RVT_N Location: 1 95-432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-1131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-1 1 31 bp Feature: domain Description: GIIM Note: maturase Location: 1188-1419 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 88-1 41 9 bp Feature: gene Location: 2095-2388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACOOE010000015.1 (101594 bp)
Overview 1 RT 1: 87637-92529 bp Neighborhood of RT #1 [87637, 92529] HTH_17 HTH_17 HTH_17 HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons Feature: gene Location: 87637-88548 bp Feature: domain Description: HTH_17 Location: 87853-88000 bp Feature: domain Description: HTH_17 Location: 87853-88000 bp Feature: domain Description: HTH_17 Location: 88048-88189 bp Feature: domain Description: HTH_17 Location: 88048-88189 bp Feature: domain Description: HTH_17 Location: 88222-88351 bp Feature: domain Description: HTH_17 Location: 882 2 2 -88351 bp Feature: domain Description: HTH_17 Location: 88390-88531 bp Feature: domain Description: HTH_17 Location: 88390-88531 bp Feature: gene Location: 88648-89754 bp Feature: domain Description: Arm-DNA-bind_5 Location: 88672-88879 bp Feature: domain Description: Arm-DNA-bind_5 Location: 88672 -88879 bp Feature: domain Description: Phage_int_SAM_5 Location: 88945-89206 bp Feature: domain Description: Phage_int_SAM_5 Location: 88945-892 06 bp Feature: domain Description: INTN1_C_like Location: 89266-89722 bp Feature: domain Description: INTN1_C_like Location: 892 66-8972 2 bp Feature: gene Location: 90112-91185 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90349-90907 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90349-90907 bp Feature: gene Location: 91347-91670 bp Feature: gene Location: 91675-92529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACOOE010000035.1 (2984 bp)
Overview 1 RT 1: 1-2983 bp Neighborhood of RT #1 [1, 2982] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 1-318 bp Feature: domain Description: Bac_Flav_CT_G Location: 4-304 bp Feature: domain Description: Bac_Flav_CT_G Location: 4-3 04 bp Feature: gene Location: 353-520 bp Feature: gene Location: 866-2680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1130-1952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 0-1952 bp Feature: domain Description: Intron_maturas2 Location: 2027-2345 bp Feature: domain Description: Intron_maturas2 Location: 2027-23 45 bp Feature: domain Description: HNHc Note: nucleases Location: 2501-2651 bp Feature: domain Description: HNHc Note: nucleases Location: 2501-2651 bp Feature: gene Location: 2758-2982 bp Feature: domain Description: Bac_Flav_CT_G Location: 2782-2983 bp Feature: domain Description: Bac_Flav_CT_G Location: 2782-2983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACOOE010000008.1 (313197 bp)
Overview 1 RT 1: 123882-131695 bp Neighborhood of RT #1 [123882, 131695] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 123882-129290 bp Feature: domain Description: DUF1566 Location: 129015-129279 bp Feature: domain Description: DUF1566 Location: 129015-129279 bp Feature: gene Location: 129329-129685 bp Feature: domain Description: Avd_like Location: 129356-129665 bp Feature: domain Description: Avd_like Location: 129356-129665 bp Feature: gene Location: 129693-131105 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 130083-130785 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 130083-130785 bp Feature: gene Location: 131044-131439 bp Feature: gene Location: 131324-131695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACOOE010000011.1 (121016 bp)
Overview 1 RT 1: 48223-51410 bp Neighborhood of RT #1 [48223, 51427] PRK04930 AcrB RVT_N RVT-GII PDDEXK_9 Feature: gene Location: 48223-48780 bp Feature: domain Description: PRK04930 Location: 48235-48736 bp Feature: domain Description: PRK04930 Location: 48235 -48736 bp Feature: gene Location: 48829-49599 bp Feature: domain Description: AcrB Location: 48838-49552 bp Feature: domain Description: AcrB Location: 48838-495 5 2 bp Feature: gene Location: 49641-50132 bp Feature: domain Description: RVT_N Location: 49644-49782 bp Feature: domain Description: RVT_N Location: 49644-49782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49830-50100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49830-5 0100 bp Feature: gene Location: 50652-50801 bp Feature: gene Location: 51017-51427 bp Feature: domain Description: PDDEXK_9 Location: 51137-51410 bp Feature: domain Description: PDDEXK_9 Location: 5 1137-5 1410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACOOE010000002.1 (646793 bp)
Overview 1 RT 1: 539379-551069 bp Neighborhood of RT #1 [539379, 551185] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 539379-539549 bp Feature: gene Location: 539832-541991 bp Feature: gene Location: 542197-543327 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 542518-543061 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 542518-54306 1 bp Feature: gene Location: 543329-549286 bp Feature: domain Description: DUF4011 Location: 544559-545072 bp Feature: domain Description: DUF4011 Location: 544559-545072 bp Feature: domain Description: DEXXQc_SF1 Location: 545411-546272 bp Feature: domain Description: DEXXQc_SF1 Location: 545411-546 272 bp Feature: domain Description: DEXXQc_SF1 Location: 546839-547598 bp Feature: domain Description: DEXXQc_SF1 Location: 546 839-547598 bp Feature: domain Description: TIGR00376 Location: 547730-548117 bp Feature: domain Description: TIGR00376 Location: 547730-548117 bp Feature: domain Description: MTES_1575 Location: 548270-548555 bp Feature: domain Description: MTES_1575 Location: 548270-548555 bp Feature: domain Description: DUF3320 Location: 548795-548936 bp Feature: domain Description: DUF3320 Location: 548795-548936 bp Feature: gene Location: 549383-551185 bp Feature: domain Description: rpsA Location: 549452-551069 bp Feature: domain Description: rpsA Location: 549452-55106 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: JACOOE010000017.1 (77610 bp)
Overview 1 RT 1: 1219-7704 bp 2 RT 2: 35663-41901 bp Neighborhood of RT #1 [1219, 7704] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Neighborhood of RT #2 [35663, 41987] RVT-GII GIIM LRR_4 Porphyrn_cat_1 BPA_C CBM_4_9 Feature: gene Location: 1219-2481 bp Feature: domain Description: Relaxase Location: 1360-1819 bp Feature: domain Description: Relaxase Location: 1360-1819 bp Feature: domain Description: Relaxase Location: 2029-2242 bp Feature: domain Description: Relaxase Location: 2029-2242 bp Feature: gene Location: 2544-3467 bp Feature: domain Description: YWFCY Location: 2550-2727 bp Feature: domain Description: YWFCY Location: 2550-27 27 bp Feature: gene Location: 4104-5756 bp Feature: domain Description: RVT_N Location: 4158-4401 bp Feature: domain Description: RVT_N Location: 4158-4401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4446-5094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4446-5094 bp Feature: domain Description: GIIM Note: maturase Location: 5148-5379 bp Feature: domain Description: GIIM Note: maturase Location: 5148-537 9 bp Feature: gene Location: 5761-6996 bp Feature: domain Description: TraG-D_C Location: 6343-6676 bp Feature: domain Description: TraG-D_C Location: 6343-667 6 bp Feature: gene Location: 7168-7704 bp Feature: gene Location: 35663-35884 bp Feature: gene Location: 36004-36198 bp Feature: gene Location: 36617-38029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36953-37568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36953-37 568 bp Feature: domain Description: GIIM Note: maturase Location: 37622-37835 bp Feature: domain Description: GIIM Note: maturase Location: 37 622-37 835 bp Feature: gene Location: 38485-39795 bp Feature: domain Description: LRR_4 Location: 38686-38776 bp Feature: domain Description: LRR_4 Location: 38686-387 7 6 bp Feature: gene Location: 39801-41987 bp Feature: domain Description: Porphyrn_cat_1 Location: 40965-41271 bp Feature: domain Description: Porphyrn_cat_1 Location: 40965-4127 1 bp Feature: domain Description: BPA_C Location: 41304-41577 bp Feature: domain Description: BPA_C Location: 41304-4157 7 bp Feature: domain Description: CBM_4_9 Location: 41598-41901 bp Feature: domain Description: CBM_4_9 Location: 41598-41901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT