myRT

myRT report for GCA_014287405.1_ASM1428740v1

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Seq: JACOOD010000080.1 (6967 bp)
Overview 1 RT 1: 1162-3982 bp Neighborhood of RT #1 [1162, 3982] RVT-DGRs Feature: gene Location: 1162-1395 bp Feature: gene Location: 1417-1674 bp Feature: gene Location: 1771-3072 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1984-2581 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 984-2581 bp Feature: gene Location: 3105-3554 bp Feature: gene Location: 3740-3982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JACOOD010000002.1 (220718 bp)
Overview 1 RT 1: 148611-155877 bp Neighborhood of RT #1 [148611, 156494] RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 148611-148853 bp Feature: gene Location: 149055-150188 bp Feature: gene Location: 150142-151809 bp Feature: domain Description: RVT_N Location: 150196-150439 bp Feature: domain Description: RVT_N Location: 150196-150439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150484-151132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150484-151132 bp Feature: domain Description: GIIM Note: maturase Location: 151186-151417 bp Feature: domain Description: GIIM Note: maturase Location: 151186-151417 bp Feature: gene Location: 151791-152105 bp Feature: gene Location: 152466-156494 bp Feature: domain Description: N6_Mtase Location: 152994-153369 bp Feature: domain Description: N6_Mtase Location: 152 994-153369 bp Feature: domain Description: COG4646 Location: 154134-155877 bp Feature: domain Description: COG4646 Location: 154134-155877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: JACOOD010000027.1 (51386 bp)
Overview 1 RT 1: 36975-41581 bp Neighborhood of RT #1 [36975, 41658] RVT-DGRs Phage_Mu_F LPD3 Feature: gene Location: 36975-37217 bp Feature: gene Location: 37417-37902 bp Feature: gene Location: 37899-39200 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38109-38709 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 8109-3 8709 bp Feature: gene Location: 39582-39866 bp Feature: gene Location: 39913-41658 bp Feature: domain Description: Phage_Mu_F Location: 40747-41032 bp Feature: domain Description: Phage_Mu_F Location: 40747-4103 2 bp Feature: domain Description: LPD3 Location: 41308-41581 bp Feature: domain Description: LPD3 Location: 413 08-41581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233), LPD3 (pfam18798)

Seq: JACOOD010000015.1 (93226 bp)
Overview 1 RT 1: 54688-58996 bp Neighborhood of RT #1 [54688, 59100] HTH_17 HTH_17 RVT-GII Intron_maturas2 INTN1_C_like Arm-DNA-bind_5 Phage_int_SAM_5 Feature: gene Location: 54688-55002 bp Feature: domain Description: HTH_17 Location: 54850-54976 bp Feature: domain Description: HTH_17 Location: 54 850-54 976 bp Feature: gene Location: 55009-55311 bp Feature: domain Description: HTH_17 Location: 55126-55270 bp Feature: domain Description: HTH_17 Location: 55126-55270 bp Feature: gene Location: 55718-57538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55982-56804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55982-56804 bp Feature: domain Description: Intron_maturas2 Location: 56879-57185 bp Feature: domain Description: Intron_maturas2 Location: 56879-57185 bp Feature: gene Location: 58080-58325 bp Feature: domain Description: INTN1_C_like Location: 58083-58302 bp Feature: domain Description: INTN1_C_like Location: 58083-58302 bp Feature: gene Location: 58354-59100 bp Feature: domain Description: Arm-DNA-bind_5 Location: 58387-58642 bp Feature: domain Description: Arm-DNA-bind_5 Location: 58387-5864 2 bp Feature: domain Description: Phage_int_SAM_5 Location: 58702-58996 bp Feature: domain Description: Phage_int_SAM_5 Location: 58702-58996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-GII, Intron_maturas2 (pfam01348), INTN1_C_like (cd01185), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102)

Seq: JACOOD010000097.1 (2489 bp)
Overview 1 RT 1: 567-2031 bp Neighborhood of RT #1 [567, 2375] RVT-GII Intron_maturas2 Feature: gene Location: 567-2375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-1653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-165 3 bp Feature: domain Description: Intron_maturas2 Location: 1722-2031 bp Feature: domain Description: Intron_maturas2 Location: 1722-2031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: JACOOD010000052.1 (24519 bp)
Overview 1 RT 1: 16748-20866 bp Neighborhood of RT #1 [16748, 20895] DUF4141 RVT-GII matK HNHc Bac_Flav_CT_J Feature: gene Location: 16748-17002 bp Feature: domain Description: DUF4141 Location: 16787-16943 bp Feature: domain Description: DUF4141 Location: 16 787-16 943 bp Feature: gene Location: 17042-17203 bp Feature: gene Location: 17523-19358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17817-18639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17817-186 39 bp Feature: domain Description: matK Location: 18816-19029 bp Feature: domain Description: matK Location: 18816 -19029 bp Feature: domain Description: HNHc Note: nucleases Location: 19191-19332 bp Feature: domain Description: HNHc Note: nucleases Location: 19191-19332 bp Feature: gene Location: 19351-19887 bp Feature: gene Location: 19891-20895 bp Feature: domain Description: Bac_Flav_CT_J Location: 19897-20866 bp Feature: domain Description: Bac_Flav_CT_J Location: 19897-2086 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, matK (CHL00002), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: JACOOD010000004.1 (161733 bp)
Overview 1 RT 1: 43168-46376 bp Neighborhood of RT #1 [43168, 46376] RVT-UG27 Feature: gene Location: 43168-43446 bp Feature: gene Location: 43476-43742 bp Feature: gene Location: 43792-45054 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 43984-44620 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 43984-44620 bp Feature: gene Location: 45047-45715 bp Feature: gene Location: 45729-46376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27