myRT

myRT report for GCA_014287635.1_ASM1428763v1

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Seq: JACOPH010000054.1 (1875 bp)
Overview 1 RT 1: 93-1433 bp Neighborhood of RT #1 [93, 1783] RVT-GII Feature: gene Location: 93-275 bp Feature: gene Location: 488-1783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743-1433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743-1 433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACOPH010000001.1 (694706 bp)
Overview 1 RT 1: 387610-396107 bp 2 RT 2: 671861-678447 bp Neighborhood of RT #1 [387610, 396109] COG0610 COG1479 COG3586 RVT-UG2 COG2865 Neighborhood of RT #2 [671861, 678464] DnaG DUF3991 Toprim_2 AAA_25 TnpW RVT-CRISPR COG4951 CRISPR_Cas6 Feature: gene Location: 387610-390495 bp Feature: domain Description: COG0610 Location: 387619-390298 bp Feature: domain Description: COG0610 Location: 387619-3902 98 bp Feature: gene Location: 390508-392574 bp Feature: domain Description: COG1479 Location: 390532-391792 bp Feature: domain Description: COG1479 Location: 390532 -391792 bp Feature: domain Description: COG3586 Location: 392269-392563 bp Feature: domain Description: COG3586 Location: 392 2 69-392 563 bp Feature: gene Location: 392896-394191 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 393082-393892 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 393082 -393892 bp Feature: gene Location: 394224-394472 bp Feature: gene Location: 394658-396109 bp Feature: domain Description: COG2865 Location: 394661-396107 bp Feature: domain Description: COG2 865 Location: 394661-396107 bp Feature: gene Location: 671861-673738 bp Feature: domain Description: DnaG Location: 671987-672140 bp Feature: domain Description: DnaG Location: 671987-672 140 bp Feature: domain Description: DUF3991 Location: 672203-672410 bp Feature: domain Description: DUF3991 Location: 672 2 03-672 410 bp Feature: domain Description: Toprim_2 Location: 672434-672701 bp Feature: domain Description: Toprim_2 Location: 672 434-672 701 bp Feature: domain Description: AAA_25 Location: 672776-673295 bp Feature: domain Description: AAA_2 5 Location: 672 776-6732 95 bp Feature: gene Location: 673735-674061 bp Feature: domain Description: TnpW Location: 673945-674044 bp Feature: domain Description: TnpW Location: 673945-674044 bp Feature: gene Location: 674102-676753 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 674105-674672 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 674105-674672 bp Feature: domain Description: COG4951 Location: 675353-676133 bp Feature: domain Description: COG4951 Location: 675353-676133 bp Feature: gene Location: 677127-677405 bp Feature: gene Location: 677538-678464 bp Feature: domain Description: CRISPR_Cas6 Location: 678105-678447 bp Feature: domain Description: CRISPR_Cas6 Location: 678105-678447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), COG3586 (Predicted transport protein ), RVT-UG2, COG2865 (Predicted transcriptional regulator, contains HTH domain ), DnaG (COG0358), DUF3991 (pfam13154), Toprim_2 (pfam13155), AAA_25 (pfam13481), TnpW (pfam14202)
RVT-CRISPR, COG4951 (Uncharacterized protein ), CRISPR_Cas6 (pfam10040)