myRT

myRT report for GCA_014323895.1_ASM1432389v1

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Seq: JACONF010000506.1 (34561 bp)
Overview 1 RT 1: 800-5495 bp Neighborhood of RT #1 [800, 5500] NlpD Hfq RVT_N RVT-GII GIIM HNH PLN02536 Feature: gene Location: 800-1723 bp Feature: domain Description: NlpD Location: 1301-1706 bp Feature: domain Description: NlpD Location: 1 301 -1 706 bp Feature: gene Location: 1844-2038 bp Feature: domain Description: Hfq Location: 1856-2030 bp Feature: domain Description: Hfq Location: 1 856-2030 bp Feature: gene Location: 2052-3848 bp Feature: domain Description: RVT_N Location: 2097-2343 bp Feature: domain Description: RVT_N Location: 2097-2343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2391-3039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2391 -3039 bp Feature: domain Description: GIIM Note: maturase Location: 3141-3372 bp Feature: domain Description: GIIM Note: maturase Location: 31 41 -3372 bp Feature: domain Description: HNH Note: nucleases Location: 3597-3732 bp Feature: domain Description: HNH Note: nucleases Location: 3597-3732 bp Feature: gene Location: 4227-4394 bp Feature: gene Location: 4667-5500 bp Feature: domain Description: PLN02536 Location: 4721-5495 bp Feature: domain Description: PLN02536 Location: 4721 -5495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Hfq (TIGR02383), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PLN02536 (diaminopimelate epimerase)

Seq: JACONF010000358.1 (30103 bp)
Overview 1 RT 1: 20052-25168 bp Neighborhood of RT #1 [20052, 25206] carnitine_bodg heterocyst_DevA RVT_N RVT-GII GIIM HNH RE_XamI Feature: gene Location: 20052-21353 bp Feature: domain Description: carnitine_bodg Location: 20124-21267 bp Feature: domain Description: carnitine_bodg Location: 2 012 4-2 12 67 bp Feature: gene Location: 21478-21663 bp Feature: domain Description: heterocyst_DevA Location: 21547-21646 bp Feature: domain Description: heterocyst_DevA Location: 2 1547-2 1646 bp Feature: gene Location: 21734-23515 bp Feature: domain Description: RVT_N Location: 21773-22019 bp Feature: domain Description: RVT_N Location: 2 1773-2 2 019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22067-22703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 067-2 2 703 bp Feature: domain Description: GIIM Note: maturase Location: 22805-23036 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 805-2 3036 bp Feature: domain Description: HNH Note: nucleases Location: 23261-23396 bp Feature: domain Description: HNH Note: nucleases Location: 2 32 61-2 3396 bp Feature: gene Location: 23509-23679 bp Feature: gene Location: 24244-25206 bp Feature: domain Description: RE_XamI Location: 24406-25168 bp Feature: domain Description: RE_XamI Location: 2 4406-2 5168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carnitine_bodg (TIGR02409), heterocyst_DevA (TIGR02982), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RE_XamI (pfam09572)

Seq: JACONF010000282.1 (2742 bp)
Overview 1 RT 1: 472-2734 bp Neighborhood of RT #1 [472, 2739] OmpR RVT_N RVT-GII COG3415 Feature: gene Location: 472-1218 bp Feature: domain Description: OmpR Location: 484-1165 bp Feature: domain Description: OmpR Location: 484-1165 bp Feature: gene Location: 1403-1690 bp Feature: gene Location: 1700-2152 bp Feature: domain Description: RVT_N Location: 1715-1859 bp Feature: domain Description: RVT_N Location: 1715-1859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2150 bp Feature: gene Location: 2287-2739 bp Feature: domain Description: COG3415 Location: 2392-2734 bp Feature: domain Description: COG3 415 Location: 23 92-273 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), RVT_N (pfam13655), RVT-GII, COG3415 (Transposase )

Seq: JACONF010000490.1 (22122 bp)
Overview 1 RT 1: 5-2952 bp Neighborhood of RT #1 [5, 3017] HNH RVT_N RVT-GII GIIM COG4637 COG4637 Feature: gene Location: 5-295 bp Feature: domain Description: HNH Note: nucleases Location: 41-179 bp Feature: domain Description: HNH Note: nucleases Location: 4 1-179 bp Feature: gene Location: 461-1798 bp Feature: domain Description: RVT_N Location: 500-746 bp Feature: domain Description: RVT_N Location: 500-74 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794 -14 4 2 bp Feature: domain Description: GIIM Note: maturase Location: 1541-1775 bp Feature: domain Description: GIIM Note: maturase Location: 154 1-1775 bp Feature: gene Location: 2444-2614 bp Feature: domain Description: COG4637 Location: 2456-2570 bp Feature: domain Description: COG4 637 Location: 24 56-2570 bp Feature: gene Location: 2637-3017 bp Feature: domain Description: COG4637 Location: 2646-2952 bp Feature: domain Description: COG4 637 Location: 264 6-2952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH (pfam01844), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4637 (Predicted ATPase )

Seq: JACONF010000347.1 (6069 bp)
Overview 1 RT 1: 2-1096 bp Neighborhood of RT #1 [2, 1293] RVT-GII DUF820 Feature: gene Location: 2-205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 -203 bp Feature: gene Location: 250-429 bp Feature: gene Location: 646-1293 bp Feature: domain Description: DUF820 Location: 772-1096 bp Feature: domain Description: DUF820 Location: 772-1096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF820

Seq: JACONF010000397.1 (5747 bp)
Overview 1 RT 1: 1-1508 bp Neighborhood of RT #1 [1, 1508] RVT-GII RNaseIII Feature: gene Location: 1-477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-253 bp Feature: gene Location: 498-1265 bp Feature: domain Description: RNaseIII Location: 591-1227 bp Feature: domain Description: RNaseIII Location: 591-1227 bp Feature: gene Location: 1332-1508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RNaseIII (TIGR02191)

Seq: JACONF010000403.1 (9856 bp)
Overview 1 RT 1: 130-3739 bp Neighborhood of RT #1 [130, 3795] group_II_RT_mat RVT-GII HMMR_N TrxB Feature: gene Location: 130-558 bp Feature: gene Location: 811-1080 bp Feature: gene Location: 1223-1516 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1262-1355 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1262-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388-1505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388-1505 bp Feature: gene Location: 2215-2775 bp Feature: domain Description: HMMR_N Location: 2221-2695 bp Feature: domain Description: HMMR_N Location: 2221-2695 bp Feature: gene Location: 2791-3795 bp Feature: domain Description: TrxB Location: 2836-3739 bp Feature: domain Description: TrxB Location: 2836-37 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, HMMR_N (pfam15905), TrxB (COG0492)

Seq: JACONF010000357.1 (5836 bp)
Overview 1 RT 1: 244-4482 bp Neighborhood of RT #1 [244, 4493] RVT_N RVT-GII GIIM McrA CrtR_beta-carotene-hydroxylase DadA Feature: gene Location: 244-2040 bp Feature: domain Description: RVT_N Location: 298-541 bp Feature: domain Description: RVT_N Location: 298 -541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586-1237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58 6-1237 bp Feature: domain Description: GIIM Note: maturase Location: 1342-1570 bp Feature: domain Description: GIIM Note: maturase Location: 1342-1570 bp Feature: domain Description: McrA Location: 1657-1936 bp Feature: domain Description: McrA Location: 1657-1936 bp Feature: gene Location: 2611-3165 bp Feature: domain Description: CrtR_beta-carotene-hydroxylase Location: 2689-3154 bp Feature: domain Description: CrtR_beta-carotene-hydroxylase Location: 268 9-3154 bp Feature: gene Location: 3321-4493 bp Feature: domain Description: DadA Location: 3324-4482 bp Feature: domain Description: DadA Location: 3324-448 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), CrtR_beta-carotene-hydroxylase (cd03514), DadA (COG0665)

Seq: JACONF010000449.1 (12538 bp)
Overview 1 RT 1: 1-5878 bp Neighborhood of RT #1 [1, 5878] HNH RVT-UG13 PLN03241 PLN03241 Feature: gene Location: 1-222 bp Feature: domain Description: HNH Note: nucleases Location: 7-103 bp Feature: domain Description: HNH Note: nucleases Location: 7-103 bp Feature: gene Location: 422-1573 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 425-641 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 425-641 bp Feature: gene Location: 1631-5320 bp Feature: domain Description: PLN03241 Location: 1637-4004 bp Feature: domain Description: PLN03241 Location: 1637-4004 bp Feature: domain Description: PLN03241 Location: 4013-5315 bp Feature: domain Description: PLN03241 Location: 4013-5315 bp Feature: gene Location: 5690-5878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH (pfam01844), RVT-UG13, PLN03241 (magnesium chelatase subunit H; Provisional)

Seq: JACONF010000338.1 (8510 bp)
Overview 1 RT 1: 6877-8404 bp Neighborhood of RT #1 [6877, 8508] COG2442 COG2442 RVT-GII Feature: gene Location: 6877-7116 bp Feature: domain Description: COG2442 Location: 6892-7051 bp Feature: domain Description: COG2442 Location: 6892-7051 bp Feature: gene Location: 7643-7933 bp Feature: domain Description: COG2442 Location: 7661-7868 bp Feature: domain Description: COG2442 Location: 7661-7868 bp Feature: gene Location: 7990-8508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8035-8404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8035-8404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2442 (Uncharacterized conserved protein, DUF433 family ), RVT-GII

Seq: JACONF010000434.1 (38513 bp)
Overview 1 RT 1: 34486-37865 bp Neighborhood of RT #1 [34486, 37888] YjbI Pentapeptide Pentapeptide Pentapeptide RVT_N RVT-GII GIIM McrA Pentapeptide Feature: gene Location: 34486-34710 bp Feature: domain Description: YjbI Location: 34495-34681 bp Feature: domain Description: YjbI Location: 34495-34681 bp Feature: gene Location: 34917-35279 bp Feature: domain Description: Pentapeptide Location: 34923-35031 bp Feature: domain Description: Pentapeptide Location: 34923-35031 bp Feature: domain Description: Pentapeptide Location: 35037-35136 bp Feature: domain Description: Pentapeptide Location: 35037-35136 bp Feature: domain Description: Pentapeptide Location: 35181-35277 bp Feature: domain Description: Pentapeptide Location: 35181-35277 bp Feature: gene Location: 35350-37164 bp Feature: domain Description: RVT_N Location: 35413-35659 bp Feature: domain Description: RVT_N Location: 35413-35659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35710-36358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35710-36358 bp Feature: domain Description: GIIM Note: maturase Location: 36460-36691 bp Feature: domain Description: GIIM Note: maturase Location: 36460-36691 bp Feature: domain Description: McrA Location: 36763-37069 bp Feature: domain Description: McrA Location: 36763-37069 bp Feature: gene Location: 37345-37677 bp Feature: gene Location: 37733-37888 bp Feature: domain Description: Pentapeptide Location: 37778-37865 bp Feature: domain Description: Pentapeptide Location: 37778-37865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjbI (COG2346), Pentapeptide (pfam00805), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACONF010000092.1 (4661 bp)
Overview 1 RT 1: 2-2161 bp Neighborhood of RT #1 [2, 2161] RVT-GII urea_ABC_UrtA Feature: gene Location: 2-280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38-281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38-281 bp Feature: gene Location: 415-1680 bp Feature: domain Description: urea_ABC_UrtA Location: 529-1606 bp Feature: domain Description: urea_ABC_UrtA Location: 529-1606 bp Feature: gene Location: 1847-2161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, urea_ABC_UrtA (TIGR03407)

Seq: JACONF010000160.1 (9889 bp)
Overview 1 RT 1: 2-1555 bp Neighborhood of RT #1 [2, 1555] DDE_3 RVT-GII Feature: gene Location: 2-274 bp Feature: domain Description: DDE_3 Location: 14-194 bp Feature: domain Description: DDE_3 Location: 14-194 bp Feature: gene Location: 310-600 bp Feature: gene Location: 837-1064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1059 bp Feature: gene Location: 1185-1403 bp Feature: gene Location: 1412-1555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII

Seq: JACONF010000080.1 (12891 bp)
Overview 1 RT 1: 10082-12889 bp Neighborhood of RT #1 [10082, 12888] ARS_like RVT-GII GIIM Feature: gene Location: 10082-11812 bp Feature: domain Description: ARS_like Location: 10277-11612 bp Feature: domain Description: ARS_like Location: 10277-11612 bp Feature: gene Location: 12106-12414 bp Feature: gene Location: 12535-12888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12541-12661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12541-12661 bp Feature: domain Description: GIIM Note: maturase Location: 12763-12889 bp Feature: domain Description: GIIM Note: maturase Location: 12763-12889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ARS_like (cd16146), RVT-GII, GIIM (pfam08388)