myRT

myRT report for GCA_014324025.1_ASM1432402v1

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Seq: JACONA010000001.1 Hormoscilla sp. SP5CHS1 SP5CHS1_scaffold_0, whole genome shotgun sequence (58864 bp)
Overview 1 RT 1: 56622-58753 bp Neighborhood of RT #1 [56622, 58863] COG4637 RVT_N RVT-GII GIIM Feature: gene Location: 56622-56792 bp Feature: domain Description: COG4637 Location: 56634-56748 bp Feature: domain Description: COG4637 Location: 56634-56748 bp Feature: gene Location: 56920-57057 bp Feature: gene Location: 57439-58863 bp Feature: RT Description: RVT_N Location: 57478-57724 bp Feature: RT Description: RVT_N Location: 57478-57724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57772-58420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57772-58420 bp Feature: domain Description: GIIM Note: maturase Location: 58519-58753 bp Feature: domain Description: GIIM Note: maturase Location: 5851 9-58753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4637 (Predicted ATPase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JACONA010000157.1 Hormoscilla sp. SP5CHS1 SP5CHS1_scaffold_156, whole genome shotgun sequence (10249 bp)
Overview 1 RT 1: 1-6237 bp 2 RT 2: 9118-10134 bp Neighborhood of RT #1 [1, 6257] RVT-GII RVT-GII RVT-GII GIIM HNHc RVT_N RVT-GII RVT-GII GIIM HNHc DDE_Tnp_1 DDE_5 Neighborhood of RT #2 [9118, 10247] RVT-GII Feature: gene Location: 1-336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-32 2 bp Feature: gene Location: 425-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554-671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554-671 bp Feature: gene Location: 830-1306 bp Feature: domain Description: GIIM Note: maturase Location: 947-1172 bp Feature: domain Description: GIIM Note: maturase Location: 947-1172 bp Feature: gene Location: 1333-1644 bp Feature: domain Description: HNHc Note: nucleases Location: 1447-1597 bp Feature: domain Description: HNHc Note: nucleases Location: 1447-1597 bp Feature: gene Location: 2448-2756 bp Feature: gene Location: 2815-3546 bp Feature: RT Description: RVT_N Location: 2866-3106 bp Feature: RT Description: RVT_N Location: 2 866-3106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3151-3526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3151-352 6 bp Feature: gene Location: 3674-4558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680-3791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680-3791 bp Feature: domain Description: GIIM Note: maturase Location: 3875-4103 bp Feature: domain Description: GIIM Note: maturase Location: 3875-4103 bp Feature: domain Description: HNHc Note: nucleases Location: 4355-4511 bp Feature: domain Description: HNHc Note: nucleases Location: 4355-4511 bp Feature: gene Location: 5066-5911 bp Feature: domain Description: DDE_Tnp_1 Location: 5162-5729 bp Feature: domain Description: DDE_Tnp_1 Location: 5162 -572 9 bp Feature: gene Location: 5922-6257 bp Feature: domain Description: DDE_5 Location: 5937-6237 bp Feature: domain Description: DDE_5 Location: 5937-62 37 bp Feature: gene Location: 9118-9357 bp Feature: gene Location: 9558-9875 bp Feature: gene Location: 9936-10247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9948-10134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9948-10134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), DDE_Tnp_1 (pfam01609), DDE_5 (pfam13546)

Seq: JACONA010000160.1 Hormoscilla sp. SP5CHS1 SP5CHS1_scaffold_159, whole genome shotgun sequence (13084 bp)
Overview 1 RT 1: 1-2443 bp Neighborhood of RT #1 [1, 2457] RVT_N RVT-GII GIIM N6_N4_Mtase Feature: gene Location: 1-1593 bp Feature: RT Description: RVT_N Location: 40-286 bp Feature: RT Description: RVT_N Location: 40-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 4-982 bp Feature: domain Description: GIIM Note: maturase Location: 1081-1315 bp Feature: domain Description: GIIM Note: maturase Location: 1081-13 15 bp Feature: gene Location: 1906-2145 bp Feature: gene Location: 2182-2457 bp Feature: domain Description: N6_N4_Mtase Location: 2290-2443 bp Feature: domain Description: N6_N4_Mtase Location: 2290-2443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_N4_Mtase (pfam01555)

Seq: JACONA010000268.1 Hormoscilla sp. SP5CHS1 SP5CHS1_scaffold_267, whole genome shotgun sequence (8115 bp)
Overview 1 RT 1: 4750-7796 bp Neighborhood of RT #1 [4750, 7796] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 4750-4899 bp Feature: gene Location: 4901-5071 bp Feature: gene Location: 5772-7526 bp Feature: RT Description: RVT_N Location: 5826-6072 bp Feature: RT Description: RVT_N Location: 5826-6072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6114-6759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6114 -6759 bp Feature: domain Description: GIIM Note: maturase Location: 6861-7092 bp Feature: domain Description: GIIM Note: maturase Location: 6861-7092 bp Feature: domain Description: HNHc Note: nucleases Location: 7275-7428 bp Feature: domain Description: HNHc Note: nucleases Location: 7275-74 28 bp Feature: gene Location: 7638-7796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACONA010000004.1 Hormoscilla sp. SP5CHS1 SP5CHS1_scaffold_3, whole genome shotgun sequence (73689 bp)
Overview 1 RT 1: 54941-59624 bp Neighborhood of RT #1 [54941, 59641] PLN02536 RVT_N RVT-GII GIIM HNH Hfq NlpD Feature: gene Location: 54941-55774 bp Feature: domain Description: PLN02536 Location: 54995-55769 bp Feature: domain Description: PLN025 36 Location: 5 4995 -5 5 769 bp Feature: gene Location: 56047-56214 bp Feature: gene Location: 56593-58389 bp Feature: RT Description: RVT_N Location: 56638-56884 bp Feature: RT Description: RVT_N Location: 5 6638-5 6884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56932-57580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 6932-5 75 80 bp Feature: domain Description: GIIM Note: maturase Location: 57682-57913 bp Feature: domain Description: GIIM Note: maturase Location: 5 7682-5 7913 bp Feature: domain Description: HNH Note: nucleases Location: 58138-58273 bp Feature: domain Description: HNH Note: nucleases Location: 5 8138-5 8273 bp Feature: gene Location: 58403-58597 bp Feature: domain Description: Hfq Location: 58415-58589 bp Feature: domain Description: Hfq Location: 5 8415 -5 85 89 bp Feature: gene Location: 58718-59641 bp Feature: domain Description: NlpD Location: 59213-59624 bp Feature: domain Description: NlpD Location: 5 9213-5 9624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02536 (diaminopimelate epimerase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Hfq (TIGR02383), NlpD (COG0739)

Seq: JACONA010000335.1 Hormoscilla sp. SP5CHS1 SP5CHS1_scaffold_334, whole genome shotgun sequence (4574 bp)
Overview 1 RT 1: 21-4560 bp Neighborhood of RT #1 [21, 4571] RVT-GII GIIM HNHc RVT_N RVT-GII PRK05579 Feature: gene Location: 21-239 bp Feature: gene Location: 690-2069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702-1197 bp Feature: domain Description: GIIM Note: maturase Location: 1254-1461 bp Feature: domain Description: GIIM Note: maturase Location: 1254-146 1 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1920 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1920 bp Feature: gene Location: 2080-2643 bp Feature: RT Description: RVT_N Location: 2194-2440 bp Feature: RT Description: RVT_N Location: 2194-2440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2491-2596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2491-2596 bp Feature: gene Location: 2961-3146 bp Feature: gene Location: 3543-4571 bp Feature: domain Description: PRK05579 Location: 3549-4560 bp Feature: domain Description: PRK05579 Location: 3549-456 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated)

Seq: JACONA010000354.1 Hormoscilla sp. SP5CHS1 SP5CHS1_scaffold_353, whole genome shotgun sequence (4923 bp)
Overview 1 RT 1: 236-3386 bp Neighborhood of RT #1 [236, 3442] RVT_N RVT-GII Spc7 TrxB Feature: gene Location: 236-412 bp Feature: gene Location: 458-727 bp Feature: gene Location: 714-1163 bp Feature: RT Description: RVT_N Location: 798-1011 bp Feature: RT Description: RVT_N Location: 7 98-1011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1035-1152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1035-1152 bp Feature: gene Location: 1862-2422 bp Feature: domain Description: Spc7 Location: 1895-2336 bp Feature: domain Description: Spc7 Location: 1895-2336 bp Feature: gene Location: 2438-3442 bp Feature: domain Description: TrxB Location: 2483-3386 bp Feature: domain Description: TrxB Location: 2483-3386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spc7 (smart00787), TrxB (COG0492), RVT_N (pfam13655), RVT-GII

Seq: JACONA010000375.1 Hormoscilla sp. SP5CHS1 SP5CHS1_scaffold_374, whole genome shotgun sequence (3659 bp)
Overview 1 RT 1: 3-1930 bp Neighborhood of RT #1 [3, 1935] RVT-GII PRK05948 Feature: gene Location: 3-359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-192 bp Feature: gene Location: 605-1141 bp Feature: gene Location: 1228-1935 bp Feature: domain Description: PRK05948 Location: 1231-1930 bp Feature: domain Description: PRK05948 Location: 1231-1930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05948 (precorrin-2 C(20)-methyltransferase), RVT-GII

Seq: JACONA010000006.1 Hormoscilla sp. SP5CHS1 SP5CHS1_scaffold_5, whole genome shotgun sequence (37491 bp)
Overview 1 RT 1: 3-1701 bp Neighborhood of RT #1 [3, 1701] RVT-GII GIIM Feature: gene Location: 3-764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-330 bp Feature: domain Description: GIIM Note: maturase Location: 441-675 bp Feature: domain Description: GIIM Note: maturase Location: 441-675 bp Feature: gene Location: 936-1241 bp Feature: gene Location: 1270-1701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACONA010000096.1 Hormoscilla sp. SP5CHS1 SP5CHS1_scaffold_95, whole genome shotgun sequence (14574 bp)
Overview 1 RT 1: 7762-11023 bp Neighborhood of RT #1 [7762, 11028] CrtR_beta-carotene-hydroxylase HNH RVT_N RVT-GII GIIM CrtR_beta-carotene-hydroxylase Feature: gene Location: 7762-8082 bp Feature: domain Description: CrtR_beta-carotene-hydroxylase Location: 7765-7987 bp Feature: domain Description: CrtR_beta-carotene-hydroxylase Location: 7765-7987 bp Feature: gene Location: 8113-8340 bp Feature: domain Description: HNH Note: nucleases Location: 8125-8230 bp Feature: domain Description: HNH Note: nucleases Location: 8125-8230 bp Feature: gene Location: 8452-9903 bp Feature: RT Description: RVT_N Location: 8506-8749 bp Feature: RT Description: RVT_N Location: 8506-8749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8794-9445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8794-9445 bp Feature: domain Description: GIIM Note: maturase Location: 9550-9778 bp Feature: domain Description: GIIM Note: maturase Location: 9550-9778 bp Feature: gene Location: 10150-10353 bp Feature: gene Location: 10483-11028 bp Feature: domain Description: CrtR_beta-carotene-hydroxylase Location: 10561-11023 bp Feature: domain Description: CrtR_beta-carotene-hydroxylase Location: 10 561-110 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CrtR_beta-carotene-hydroxylase (cd03514), HNH (pfam01844), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)