myRT

myRT report for GCA_014324065.1_ASM1432406v1

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Seq: JACOMV010000017.1 Hormoscilla sp. SP12CHS1 SP12CHS1_Ga0102016_1017, whole genome shotgun sequence (59973 bp)
Overview 1 RT 1: 54295-58969 bp Neighborhood of RT #1 [54295, 58986] PLN02536 RVT_N RVT-GII GIIM HNH Hfq NlpD Feature: gene Location: 54295-55128 bp Feature: domain Description: PLN02536 Location: 54349-55123 bp Feature: domain Description: PLN02536 Location: 54349-551 23 bp Feature: gene Location: 55401-55568 bp Feature: gene Location: 55947-57734 bp Feature: RT Description: RVT_N Location: 55992-56238 bp Feature: RT Description: RVT_N Location: 55992-56238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56286-56925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56286-56925 bp Feature: domain Description: GIIM Note: maturase Location: 57027-57258 bp Feature: domain Description: GIIM Note: maturase Location: 57027-57258 bp Feature: domain Description: HNH Note: nucleases Location: 57483-57618 bp Feature: domain Description: HNH Note: nucleases Location: 57483-5761 8 bp Feature: gene Location: 57748-57942 bp Feature: domain Description: Hfq Location: 57760-57934 bp Feature: domain Description: Hfq Location: 57760-57934 bp Feature: gene Location: 58063-58986 bp Feature: domain Description: NlpD Location: 58555-58969 bp Feature: domain Description: NlpD Location: 58555-58969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02536 (diaminopimelate epimerase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Hfq (TIGR02383), NlpD (COG0739)

Seq: JACOMV010000058.1 Hormoscilla sp. SP12CHS1 SP12CHS1_Ga0102016_1058, whole genome shotgun sequence (14408 bp)
Overview 1 RT 1: 4400-8532 bp Neighborhood of RT #1 [4400, 8532] RVT_N RVT-GII GIIM HNH Feature: gene Location: 4400-4588 bp Feature: gene Location: 4959-5129 bp Feature: gene Location: 5883-7598 bp Feature: RT Description: RVT_N Location: 5937-6183 bp Feature: RT Description: RVT_N Location: 5937-6183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6225-6864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 2 5-6864 bp Feature: domain Description: GIIM Note: maturase Location: 6966-7197 bp Feature: domain Description: GIIM Note: maturase Location: 6966-7197 bp Feature: domain Description: HNH Note: nucleases Location: 7404-7542 bp Feature: domain Description: HNH Note: nucleases Location: 7404-7542 bp Feature: gene Location: 7710-7868 bp Feature: gene Location: 8155-8532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JACOMV010000144.1 Hormoscilla sp. SP12CHS1 SP12CHS1_Ga0102016_1144, whole genome shotgun sequence (14935 bp)
Overview 1 RT 1: 964-4309 bp Neighborhood of RT #1 [964, 4323] N6_N4_Mtase McrA RVT_N RVT-GII GIIM N6_N4_Mtase Feature: gene Location: 964-1509 bp Feature: domain Description: N6_N4_Mtase Location: 1243-1438 bp Feature: domain Description: N6_N4_Mtase Location: 1243 -143 8 bp Feature: gene Location: 1784-2041 bp Feature: domain Description: McrA Location: 1799-2033 bp Feature: domain Description: McrA Location: 1799-203 3 bp Feature: gene Location: 2044-3459 bp Feature: RT Description: RVT_N Location: 2083-2329 bp Feature: RT Description: RVT_N Location: 2083 -23 29 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2377-3025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 77-3 025 bp Feature: domain Description: GIIM Note: maturase Location: 3124-3358 bp Feature: domain Description: GIIM Note: maturase Location: 3 124-3 3 58 bp Feature: gene Location: 3772-4011 bp Feature: gene Location: 4048-4323 bp Feature: domain Description: N6_N4_Mtase Location: 4156-4309 bp Feature: domain Description: N6_N4_Mtase Location: 4156-43 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT McrA (COG4058), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_N4_Mtase (pfam01555)

Seq: JACOMV010000208.1 Hormoscilla sp. SP12CHS1 SP12CHS1_Ga0102016_1208, whole genome shotgun sequence (12617 bp)
Overview 1 RT 1: 7812-11022 bp Neighborhood of RT #1 [7812, 11027] CrtR_beta-carotene-hydroxylase HNH RVT_N RVT-GII GIIM CrtR_beta-carotene-hydroxylase Feature: gene Location: 7812-8132 bp Feature: domain Description: CrtR_beta-carotene-hydroxylase Location: 7815-8037 bp Feature: domain Description: CrtR_beta-carotene-hydroxylase Location: 7815-8037 bp Feature: gene Location: 8163-8339 bp Feature: domain Description: HNH Note: nucleases Location: 8175-8274 bp Feature: domain Description: HNH Note: nucleases Location: 8175-8274 bp Feature: gene Location: 8451-9902 bp Feature: RT Description: RVT_N Location: 8505-8748 bp Feature: RT Description: RVT_N Location: 8505-874 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8793-9444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8793-94 4 4 bp Feature: domain Description: GIIM Note: maturase Location: 9549-9777 bp Feature: domain Description: GIIM Note: maturase Location: 954 9-9777 bp Feature: gene Location: 10149-10352 bp Feature: gene Location: 10482-11027 bp Feature: domain Description: CrtR_beta-carotene-hydroxylase Location: 10560-11022 bp Feature: domain Description: CrtR_beta-carotene-hydroxylase Location: 10560-11022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CrtR_beta-carotene-hydroxylase (cd03514), HNH (pfam01844), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JACOMV010000357.1 Hormoscilla sp. SP12CHS1 SP12CHS1_Ga0102016_1357, whole genome shotgun sequence (4294 bp)
Overview 1 RT 1: 3-2584 bp Neighborhood of RT #1 [3, 2589] RVT_N RVT-GII PRK05948 Feature: gene Location: 3-1013 bp Feature: RT Description: RVT_N Location: 6-150 bp Feature: RT Description: RVT_N Location: 6-15 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198-846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198-846 bp Feature: gene Location: 1259-1795 bp Feature: gene Location: 1882-2589 bp Feature: domain Description: PRK05948 Location: 1885-2584 bp Feature: domain Description: PRK05 948 Location: 1885 -25 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05948 (precorrin-2 C(20)-methyltransferase), RVT_N (pfam13655), RVT-GII

Seq: JACOMV010000360.1 Hormoscilla sp. SP12CHS1 SP12CHS1_Ga0102016_1360, whole genome shotgun sequence (4936 bp)
Overview 1 RT 1: 1515-4907 bp Neighborhood of RT #1 [1515, 4907] TrxB Spc7 RVT_N RVT-GII Feature: gene Location: 1515-2519 bp Feature: domain Description: TrxB Location: 1560-2463 bp Feature: domain Description: TrxB Location: 156 0-246 3 bp Feature: gene Location: 2535-3095 bp Feature: domain Description: Spc7 Location: 2568-3009 bp Feature: domain Description: Spc7 Location: 256 8-3009 bp Feature: gene Location: 3794-4243 bp Feature: RT Description: RVT_N Location: 3878-4091 bp Feature: RT Description: RVT_N Location: 3878-4091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4115-4232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4115-4232 bp Feature: gene Location: 4230-4499 bp Feature: gene Location: 4689-4907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrxB (COG0492), Spc7 (smart00787), RVT_N (pfam13655), RVT-GII

Seq: JACOMV010000505.1 Hormoscilla sp. SP12CHS1 SP12CHS1_Ga0102016_1505, whole genome shotgun sequence (1896 bp)
Overview 1 RT 1: 97-1683 bp Neighborhood of RT #1 [97, 1712] GIIM McrA RVT_N RVT-GII Feature: gene Location: 97-840 bp Feature: domain Description: GIIM Note: maturase Location: 292-526 bp Feature: domain Description: GIIM Note: maturase Location: 292-526 bp Feature: domain Description: McrA Location: 607-811 bp Feature: domain Description: McrA Location: 607 -811 bp Feature: gene Location: 753-1712 bp Feature: RT Description: RVT_N Location: 792-1038 bp Feature: RT Description: RVT_N Location: 7 92-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1086-1683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1086-1683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JACOMV010000544.1 Hormoscilla sp. SP12CHS1 SP12CHS1_Ga0102016_1544, whole genome shotgun sequence (1309 bp)
Overview 1 RT 1: 1-1246 bp Neighborhood of RT #1 [1, 1246] RVT-GII RVT-GII RVT_N Feature: gene Location: 1-531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-460 bp Feature: gene Location: 541-720 bp Feature: RT Description: RVT_N Location: 544-718 bp Feature: RT Description: RVT_N Location: 544-718 bp Feature: gene Location: 1106-1246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655)