myRT

myRT report for GCA_014325565.1_ASM1432556v1

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Seq: JAAIGP010000111.1 (3475 bp)
Overview 1 RT 1: 95-2724 bp Neighborhood of RT #1 [95, 3386] HsdM RVT-AbiP2 Feature: gene Location: 95-1573 bp Feature: domain Description: HsdM Location: 116-1541 bp Feature: domain Description: HsdM Location: 1 1 6-1 541 bp Feature: gene Location: 1911-3386 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2259-2724 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2259-2724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2

Seq: JAAIGP010000022.1 (49152 bp)
Overview 1 RT 1: 18365-29270 bp Neighborhood of RT #1 [18365, 29284] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 18365-18709 bp Feature: domain Description: RelB_DinJ Location: 18575-18701 bp Feature: domain Description: RelB_DinJ Location: 18575-18701 bp Feature: gene Location: 18778-19794 bp Feature: domain Description: FtsK_SpoIIIE Location: 19435-19675 bp Feature: domain Description: FtsK_SpoIIIE Location: 19435-19675 bp Feature: gene Location: 20388-22262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20754-21450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0754-2 1450 bp Feature: domain Description: HNHc Note: nucleases Location: 21990-22149 bp Feature: domain Description: HNHc Note: nucleases Location: 2 1990-2 2 149 bp Feature: gene Location: 22364-22744 bp Feature: domain Description: FtsK Location: 22379-22619 bp Feature: domain Description: FtsK Location: 2 2 379-2 2 619 bp Feature: gene Location: 22789-23931 bp Feature: domain Description: Dcm Location: 22792-23905 bp Feature: domain Description: Dcm Location: 2 2 792 -2 3905 bp Feature: gene Location: 24466-25650 bp Feature: domain Description: HTH_XRE Location: 24496-24640 bp Feature: domain Description: HTH_XRE Location: 2 4496-2 4640 bp Feature: domain Description: Rol_Rep_N Location: 24673-24937 bp Feature: domain Description: Rol_Rep_N Location: 2 4673-2 4937 bp Feature: domain Description: Rep_trans Location: 24961-25573 bp Feature: domain Description: Rep_trans Location: 2 4961-2 5573 bp Feature: gene Location: 26530-28440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26863-27601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6863-2 7601 bp Feature: domain Description: HNHc Note: nucleases Location: 28156-28321 bp Feature: domain Description: HNHc Note: nucleases Location: 2 8156-2 832 1 bp Feature: gene Location: 28628-28768 bp Feature: gene Location: 28781-29284 bp Feature: domain Description: ArdA Location: 28799-29270 bp Feature: domain Description: ArdA Location: 2 8799-2 92 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), Dcm (COG0270), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275)

Seq: JAAIGP010000028.1 (35386 bp)
Overview 1 RT 1: 5389-10663 bp Neighborhood of RT #1 [5389, 11355] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 5389-6588 bp Feature: domain Description: Glucosaminidase Location: 5659-6055 bp Feature: domain Description: Glucosaminidase Location: 5659-6055 bp Feature: domain Description: Peptidase_M23 Location: 6232-6469 bp Feature: domain Description: Peptidase_M23 Location: 623 2-6469 bp Feature: gene Location: 6588-6908 bp Feature: gene Location: 7096-8973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7411-8149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7411-8149 bp Feature: domain Description: HNHc Note: nucleases Location: 8707-8860 bp Feature: domain Description: HNHc Note: nucleases Location: 8707-8860 bp Feature: gene Location: 9160-9393 bp Feature: gene Location: 9661-11355 bp Feature: domain Description: VirB4 Location: 9979-10663 bp Feature: domain Description: VirB4 Location: 9979-10663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: JAAIGP010000121.1 (1900 bp)
Overview 1 RT 1: 437-1646 bp Neighborhood of RT #1 [437, 1825] RVT-GII GIIM Feature: gene Location: 437-1825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758-1373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758-1373 bp Feature: domain Description: GIIM Note: maturase Location: 1430-1646 bp Feature: domain Description: GIIM Note: maturase Location: 14 30-164 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)