myRT

myRT report for GCA_014326575.1_ASM1432657v1

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Seq: JAAIIC010000002.1 (146353 bp)
Overview 1 RT 1: 13315-18056 bp Neighborhood of RT #1 [13315, 18133] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 13315-13818 bp Feature: domain Description: ArdA Location: 13333-13804 bp Feature: domain Description: ArdA Location: 1 3333-1 3804 bp Feature: gene Location: 13820-14029 bp Feature: gene Location: 14159-16069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14492-15230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4492-1 5230 bp Feature: domain Description: HNHc Note: nucleases Location: 15785-15950 bp Feature: domain Description: HNHc Note: nucleases Location: 1 5785-1 5950 bp Feature: gene Location: 16578-16727 bp Feature: gene Location: 16949-18133 bp Feature: domain Description: HTH_XRE Location: 16979-17123 bp Feature: domain Description: HTH_XRE Location: 1 6979-1 71 23 bp Feature: domain Description: Rol_Rep_N Location: 17156-17420 bp Feature: domain Description: Rol_Rep_N Location: 1 71 56-1 7420 bp Feature: domain Description: Rep_trans Location: 17444-18056 bp Feature: domain Description: Rep_trans Location: 1 7444-1 8056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JAAIIC010000007.1 (78802 bp)
Overview 1 RT 1: 28136-34336 bp Neighborhood of RT #1 [28136, 34336] INT_ICEBs1_C_like COG2865 RVT-AbiP2 HTH_XRE Feature: gene Location: 28136-29362 bp Feature: domain Description: INT_ICEBs1_C_like Location: 28739-29294 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2 8739-2 92 94 bp Feature: gene Location: 29951-31399 bp Feature: domain Description: COG2865 Location: 29957-31355 bp Feature: domain Description: COG2 865 Location: 2 9957-31355 bp Feature: gene Location: 31545-33041 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 31953-32409 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 31953-32 409 bp Feature: gene Location: 33213-33449 bp Feature: domain Description: HTH_XRE Location: 33255-33441 bp Feature: domain Description: HTH_XRE Location: 332 55-33441 bp Feature: gene Location: 33563-34336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-AbiP2, HTH_XRE (smart00530)