myRT

myRT report for GCA_014326595.1_ASM1432659v1

Download annotations/find similar RTs

Seq: JAALOM010000007.1 (79207 bp)
Overview 1 RT 1: 44467-50599 bp Neighborhood of RT #1 [44467, 50667] HTH_XRE RVT-AbiP2 COG2865 INT_ICEBs1_C_like Feature: gene Location: 44467-45240 bp Feature: gene Location: 45354-45590 bp Feature: domain Description: HTH_XRE Location: 45396-45582 bp Feature: domain Description: HTH_XRE Location: 45396-45582 bp Feature: gene Location: 45762-47258 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 46170-46626 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 461 70-46626 bp Feature: gene Location: 47404-48852 bp Feature: domain Description: COG2865 Location: 47410-48808 bp Feature: domain Description: COG2865 Location: 4741 0-48808 bp Feature: gene Location: 49441-50667 bp Feature: domain Description: INT_ICEBs1_C_like Location: 50044-50599 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 50044-50599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-AbiP2, COG2865 (Predicted transcriptional regulator, contains HTH domain ), INT_ICEBs1_C_like (cd01189)

Seq: JAALOM010000002.1 (147500 bp)
Overview 1 RT 1: 129132-134172 bp Neighborhood of RT #1 [129132, 134186] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 129132-129275 bp Feature: gene Location: 129368-130552 bp Feature: domain Description: HTH_XRE Location: 129398-129542 bp Feature: domain Description: HTH_XRE Location: 12 9398-12 9542 bp Feature: domain Description: Rol_Rep_N Location: 129575-129839 bp Feature: domain Description: Rol_Rep_N Location: 12 9575-12 9839 bp Feature: domain Description: Rep_trans Location: 129863-130475 bp Feature: domain Description: Rep_trans Location: 12 9863-130475 bp Feature: gene Location: 131432-133342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131765-132503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131765-132 503 bp Feature: domain Description: HNHc Note: nucleases Location: 133058-133223 bp Feature: domain Description: HNHc Note: nucleases Location: 133058-1332 2 3 bp Feature: gene Location: 133530-133670 bp Feature: gene Location: 133683-134186 bp Feature: domain Description: ArdA Location: 133701-134172 bp Feature: domain Description: ArdA Location: 133701-134172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)