myRT

myRT report for GCA_014338225.1_ASM1433822v1

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Seq: QUCD01000021.1 (53744 bp)
Overview 1 RT 1: 48842-51175 bp Neighborhood of RT #1 [48842, 51303] PemK_toxin RVT-GII GIIM arc_metj Feature: gene Location: 48842-49087 bp Feature: domain Description: PemK_toxin Location: 48881-49070 bp Feature: domain Description: PemK_toxin Location: 48881 -49070 bp Feature: gene Location: 49476-49613 bp Feature: gene Location: 49859-50476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49874-50099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49874-50099 bp Feature: domain Description: GIIM Note: maturase Location: 50171-50390 bp Feature: domain Description: GIIM Note: maturase Location: 501 71 -50390 bp Feature: gene Location: 50696-50983 bp Feature: gene Location: 51028-51303 bp Feature: domain Description: arc_metj Location: 51058-51175 bp Feature: domain Description: arc_metj Location: 51 058-51 1 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PemK_toxin (pfam02452), RVT-GII, GIIM (pfam08388), arc_metj (LOAD_arc_metj)

Seq: QUCD01000048.1 (45495 bp)
Overview 1 RT 1: 19510-24105 bp Neighborhood of RT #1 [19510, 24105] CcmA CcmA RVT-CRISPR Cas1_I-II-III CRISPR_Cas6 Feature: gene Location: 19510-19989 bp Feature: domain Description: CcmA Location: 19603-19927 bp Feature: domain Description: CcmA Location: 19603-1992 7 bp Feature: gene Location: 20026-20580 bp Feature: domain Description: CcmA Location: 20314-20566 bp Feature: domain Description: CcmA Location: 2 0314-2 0566 bp Feature: gene Location: 20652-22364 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 20658-21318 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 0658-2 1318 bp Feature: domain Description: Cas1_I-II-III Location: 21399-22317 bp Feature: domain Description: Cas1_I-II-III Location: 2 1399-2 2 317 bp Feature: gene Location: 22388-23410 bp Feature: domain Description: CRISPR_Cas6 Location: 23018-23357 bp Feature: domain Description: CRISPR_Cas6 Location: 2 3018-2 3357 bp Feature: gene Location: 23920-24105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), RVT-CRISPR, Cas1_I-II-III (cl00656), CRISPR_Cas6 (pfam10040)

Seq: QUCD01000045.1 (27990 bp)
Overview 1 RT 1: 163-3036 bp Neighborhood of RT #1 [163, 3036] GxxExxY RVT-CRISPR-like Feature: gene Location: 163-525 bp Feature: domain Description: GxxExxY Location: 175-517 bp Feature: domain Description: GxxExxY Location: 175-517 bp Feature: gene Location: 525-1469 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 714-1311 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 714-13 11 bp Feature: gene Location: 1469-2248 bp Feature: gene Location: 2260-3036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GxxExxY (TIGR04256), RVT-CRISPR