myRT

myRT report for GCA_014354335.1_ASM1435433v1

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Seq: JACSNK010000032.1 (24737 bp)
Overview 1 RT 1: 3-4011 bp Neighborhood of RT #1 [3, 4055] RVT-GII gatA MiaB-like-C Feature: gene Location: 3-608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27-240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27-240 bp Feature: gene Location: 970-2439 bp Feature: domain Description: gatA Location: 1018-2404 bp Feature: domain Description: gatA Location: 1 01 8-2404 bp Feature: gene Location: 2829-4055 bp Feature: domain Description: MiaB-like-C Location: 2844-4011 bp Feature: domain Description: MiaB-like-C Location: 2844-401 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, gatA (TIGR00132), MiaB-like-C (TIGR01579)

Seq: JACSNK010000020.1 (1698 bp)
Overview 1 RT 1: 145-1615 bp Neighborhood of RT #1 [145, 1653] RVT_N RVT-GII RVT-GII Feature: gene Location: 145-276 bp Feature: gene Location: 530-1306 bp Feature: domain Description: RVT_N Location: 641-887 bp Feature: domain Description: RVT_N Location: 641-887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-1241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 9-12 41 bp Feature: gene Location: 1375-1653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1396-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1396-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JACSNK010000048.1 (1918 bp)
Overview 1 RT 1: 122-1440 bp Neighborhood of RT #1 [122, 1808] group_II_RT_mat RVT-GII Feature: gene Location: 122-325 bp Feature: gene Location: 496-735 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 583-724 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 583 -724 bp Feature: gene Location: 819-1808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825-1440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825-1440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JACSNK010000073.1 (33373 bp)
Overview 1 RT 1: 32215-33368 bp Neighborhood of RT #1 [32215, 33370] group_II_RT_mat RVT-GII Feature: gene Location: 32215-32418 bp Feature: gene Location: 32589-32828 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 32676-32817 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 32676-32817 bp Feature: gene Location: 32912-33370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32918-33368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32918-33368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JACSNK010000049.1 (14788 bp)
Overview 1 RT 1: 1-1159 bp Neighborhood of RT #1 [1, 1159] RVT-GII group_II_RT_mat Feature: gene Location: 1-462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-460 bp Feature: gene Location: 546-785 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 633-774 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 633-774 bp Feature: gene Location: 956-1159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JACSNK010000077.1 (34313 bp)
Overview 1 RT 1: 163-4253 bp Neighborhood of RT #1 [163, 4267] RVT_N RVT-GII GIIM T_den_put_tspse FbpB Feature: gene Location: 163-306 bp Feature: gene Location: 344-1891 bp Feature: domain Description: RVT_N Location: 395-632 bp Feature: domain Description: RVT_N Location: 395-6 32 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 83-1334 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1619 bp Feature: domain Description: GIIM Note: maturase Location: 1385-16 19 bp Feature: gene Location: 2245-2658 bp Feature: domain Description: T_den_put_tspse Location: 2263-2644 bp Feature: domain Description: T_den_put_tspse Location: 226 3-26 44 bp Feature: gene Location: 2669-4267 bp Feature: domain Description: FbpB Location: 2696-4253 bp Feature: domain Description: FbpB Location: 26 96 -4253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), T_den_put_tspse (TIGR01784), FbpB (COG1178)

Seq: JACSNK010000035.1 (6789 bp)
Overview 1 RT 1: 4390-6419 bp Neighborhood of RT #1 [4390, 6787] PRK00024 RVT-GII Feature: gene Location: 4390-5583 bp Feature: gene Location: 5754-6269 bp Feature: domain Description: PRK00024 Location: 5907-6267 bp Feature: domain Description: PRK00024 Location: 5907 -6267 bp Feature: gene Location: 6182-6787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6206-6419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6206-6419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT-GII

Seq: JACSNK010000050.1 (21018 bp)
Overview 1 RT 1: 1-1159 bp 2 RT 2: 10055-20648 bp Neighborhood of RT #1 [1, 1159] RVT-GII group_II_RT_mat Neighborhood of RT #2 [10055, 21016] Rhs_assc_core ANK ANK RVT-GII Feature: gene Location: 1-462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-460 bp Feature: gene Location: 546-785 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 633-774 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 633-774 bp Feature: gene Location: 956-1159 bp Feature: gene Location: 10055-18586 bp Feature: domain Description: Rhs_assc_core Location: 18209-18437 bp Feature: domain Description: Rhs_assc_core Location: 18 209-18 437 bp Feature: gene Location: 18622-20031 bp Feature: domain Description: ANK Location: 19318-19609 bp Feature: domain Description: ANK Location: 19318 -19609 bp Feature: domain Description: ANK Location: 19615-19876 bp Feature: domain Description: ANK Location: 19615-198 76 bp Feature: gene Location: 20411-21016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20435-20648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20435-20648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), Rhs_assc_core (TIGR03696), ANK (smart00248)

Seq: JACSNK010000033.1 (50901 bp)
Overview 1 RT 1: 3-8180 bp 2 RT 2: 49193-50531 bp Neighborhood of RT #1 [3, 8203] RVT-GII PRK07078 repA COG4279 HepA Neighborhood of RT #2 [49193, 50899] Minor_tail_Z RVT-GII Feature: gene Location: 3-608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27-240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27-240 bp Feature: gene Location: 1773-3968 bp Feature: domain Description: PRK07078 Location: 1836-2754 bp Feature: domain Description: PRK07078 Location: 1836-2754 bp Feature: domain Description: repA Location: 2853-3612 bp Feature: domain Description: repA Location: 2853-3612 bp Feature: gene Location: 4676-8203 bp Feature: domain Description: COG4279 Location: 4694-5222 bp Feature: domain Description: COG4279 Location: 469 4-5222 bp Feature: domain Description: HepA Location: 6125-8180 bp Feature: domain Description: HepA Location: 6125-8180 bp Feature: gene Location: 49193-49669 bp Feature: gene Location: 49666-50115 bp Feature: domain Description: Minor_tail_Z Location: 49672-50110 bp Feature: domain Description: Minor_tail_Z Location: 49 672-50110 bp Feature: gene Location: 50294-50899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50318-50531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50318-50531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK07078 (hypothetical protein; Validated), repA, COG4279 (Uncharacterized conserved protein, contains Zn finger domain ), HepA (COG0553), Minor_tail_Z (pfam06763)

Seq: JACSNK010000071.1 (34564 bp)
Overview 1 RT 1: 12815-16191 bp Neighborhood of RT #1 [12815, 16191] RVT-GII pcrA Feature: gene Location: 12815-12943 bp Feature: gene Location: 12976-13197 bp Feature: gene Location: 13352-13495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13355-13490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13355-13490 bp Feature: gene Location: 13719-15635 bp Feature: domain Description: pcrA Location: 13731-15615 bp Feature: domain Description: pcrA Location: 13731-15615 bp Feature: gene Location: 15763-16191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, pcrA (TIGR01073)

Seq: JACSNK010000040.1 (7891 bp)
Overview 1 RT 1: 163-4031 bp Neighborhood of RT #1 [163, 4078] RVT_N RVT-GII GIIM T_den_put_tspse PMM_PGM Feature: gene Location: 163-306 bp Feature: gene Location: 344-1891 bp Feature: domain Description: RVT_N Location: 395-632 bp Feature: domain Description: RVT_N Location: 395-632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1334 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1619 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1619 bp Feature: gene Location: 2185-2616 bp Feature: domain Description: T_den_put_tspse Location: 2233-2608 bp Feature: domain Description: T_den_put_tspse Location: 2233-2608 bp Feature: gene Location: 2723-4078 bp Feature: domain Description: PMM_PGM Location: 2738-4031 bp Feature: domain Description: PMM_PGM Location: 2738-4031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), T_den_put_tspse (TIGR01784), PMM_PGM (cd03089)