myRT

myRT report for GCA_014377445.1_ASM1437744v1

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Seq: JACMPP010000116.1 (7766 bp)
Overview 1 RT 1: 3457-7756 bp Neighborhood of RT #1 [3457, 7764] RVT-DGRs DUF1566 Feature: gene Location: 3457-3636 bp Feature: gene Location: 4374-4526 bp Feature: gene Location: 4593-5984 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4881-5574 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4881 -5574 bp Feature: gene Location: 6061-7764 bp Feature: domain Description: DUF1566 Location: 7444-7756 bp Feature: domain Description: DUF1 566 Location: 7444-7756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF1566 (pfam07603)

Seq: JACMPP010000033.1 (14376 bp)
Overview 1 RT 1: 7612-9595 bp Neighborhood of RT #1 [7612, 9595] LGT group_II_RT_mat RVT-GII Feature: gene Location: 7612-7938 bp Feature: domain Description: LGT Location: 7648-7846 bp Feature: domain Description: LGT Location: 7648-7846 bp Feature: gene Location: 8002-8442 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8047-8320 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8047-832 0 bp Feature: gene Location: 8501-8992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8756-8870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8756-8870 bp Feature: gene Location: 9092-9292 bp Feature: gene Location: 9392-9595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LGT (pfam01790), group_II_RT_mat (TIGR04416), RVT-GII

Seq: JACMPP010000017.1 (5010 bp)
Overview 1 RT 1: 95-4593 bp Neighborhood of RT #1 [95, 4593] COG1373 RVT-GII RVT-GII 2A0306 Feature: gene Location: 95-1495 bp Feature: domain Description: COG1373 Location: 122-1301 bp Feature: domain Description: COG13 73 Location: 122-13 01 bp Feature: gene Location: 1682-2308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1715-1934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1715-193 4 bp Feature: gene Location: 2320-2517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2323-2479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 23 -2479 bp Feature: gene Location: 2911-4188 bp Feature: domain Description: 2A0306 Location: 2923-4162 bp Feature: domain Description: 2A03 06 Location: 2923 -4162 bp Feature: gene Location: 4228-4593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, 2A0306 (TIGR00909)

Seq: JACMPP010000079.1 (25151 bp)
Overview 1 RT 1: 302-5175 bp Neighborhood of RT #1 [302, 5175] RecN RVT-CRISPR-like AspB Feature: gene Location: 302-1327 bp Feature: domain Description: RecN Location: 308-1196 bp Feature: domain Description: RecN Location: 308-1196 bp Feature: gene Location: 1569-2240 bp Feature: gene Location: 2521-2910 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2824-2902 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2824 -2902 bp Feature: gene Location: 3166-4428 bp Feature: domain Description: AspB Location: 3271-4423 bp Feature: domain Description: AspB Location: 3271-4 4 23 bp Feature: gene Location: 4591-5175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RecN (COG0497), RVT-CRISPR, AspB (COG0436)

Seq: JACMPP010000077.1 (96357 bp)
Overview 1 RT 1: 226-2523 bp Neighborhood of RT #1 [226, 2669] RVT-GII GIIM YafK Feature: gene Location: 226-1017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-631 bp Feature: domain Description: GIIM Note: maturase Location: 709-931 bp Feature: domain Description: GIIM Note: maturase Location: 709-931 bp Feature: gene Location: 1035-1262 bp Feature: gene Location: 1647-2669 bp Feature: domain Description: YafK Location: 1797-2523 bp Feature: domain Description: YafK Location: 1797-25 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YafK (COG3034)

Seq: JACMPP010000154.1 (10976 bp)
Overview 1 RT 1: 3-2217 bp Neighborhood of RT #1 [3, 2222] RVT-DGRs BglX Feature: gene Location: 3-197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42-132 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42-132 bp Feature: gene Location: 418-849 bp Feature: gene Location: 1224-2222 bp Feature: domain Description: BglX Location: 1266-2217 bp Feature: domain Description: BglX Location: 126 6 -2217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, BglX (COG1472)

Seq: JACMPP010000063.1 (96991 bp)
Overview 1 RT 1: 247-2762 bp Neighborhood of RT #1 [247, 2818] Acetyltransf_1 RVT-Retrons M48C_Oma1_like Feature: gene Location: 247-753 bp Feature: domain Description: Acetyltransf_1 Location: 418-676 bp Feature: domain Description: Acetyltransf_1 Location: 418-67 6 bp Feature: gene Location: 969-1490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1170-1377 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 117 0-137 7 bp Feature: gene Location: 1487-1792 bp Feature: gene Location: 2030-2818 bp Feature: domain Description: M48C_Oma1_like Location: 2237-2762 bp Feature: domain Description: M48C_Oma1_like Location: 2237 -27 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), RVT-Retrons, M48C_Oma1_like (cd07342)