myRT

myRT report for GCA_014381395.1_ASM1438139v1

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Seq: JACNLT010000509.1 (3345 bp)
Overview 1 RT 1: 3-2703 bp Neighborhood of RT #1 [3, 2732] RVT-DGRs XerD Feature: gene Location: 3-203 bp Feature: gene Location: 327-1523 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 546-1245 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 546-1 245 bp Feature: gene Location: 1572-1748 bp Feature: gene Location: 1821-2732 bp Feature: domain Description: XerD Location: 1920-2703 bp Feature: domain Description: XerD Location: 1 920-2703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, XerD (COG4974)

Seq: JACNLT010000600.1 (13242 bp)
Overview 1 RT 1: 124-2817 bp Neighborhood of RT #1 [124, 2817] BrnT_toxin CopG_antitoxin RVT_N RVT-GII YkfC Feature: gene Location: 124-414 bp Feature: domain Description: BrnT_toxin Location: 148-388 bp Feature: domain Description: BrnT_toxin Location: 148-388 bp Feature: gene Location: 416-628 bp Feature: domain Description: CopG_antitoxin Location: 425-584 bp Feature: domain Description: CopG_antitoxin Location: 42 5-584 bp Feature: gene Location: 917-2275 bp Feature: domain Description: RVT_N Location: 923-1070 bp Feature: domain Description: RVT_N Location: 92 3-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1115-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1115-1736 bp Feature: domain Description: YkfC Location: 1874-2147 bp Feature: domain Description: YkfC Location: 1874-2 147 bp Feature: gene Location: 2354-2596 bp Feature: gene Location: 2614-2817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnT_toxin (pfam04365), CopG_antitoxin (pfam12441), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: JACNLT010000585.1 (4719 bp)
Overview 1 RT 1: 1628-4718 bp Neighborhood of RT #1 [1628, 4718] PRK07565 RVT-GII Feature: gene Location: 1628-2605 bp Feature: domain Description: PRK07565 Location: 1631-2597 bp Feature: domain Description: PRK07565 Location: 163 1-2597 bp Feature: gene Location: 2627-2848 bp Feature: gene Location: 2839-4149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3097-3787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 097-3 787 bp Feature: gene Location: 4587-4718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07565 (dihydroorotate dehydrogenase-like protein), RVT-GII

Seq: JACNLT010000304.1 (8164 bp)
Overview 1 RT 1: 3844-7792 bp Neighborhood of RT #1 [3844, 8130] RVT_N RVT-GII GIIM TPR Feature: gene Location: 3844-4047 bp Feature: gene Location: 4202-4354 bp Feature: gene Location: 4660-6099 bp Feature: domain Description: RVT_N Location: 4708-4951 bp Feature: domain Description: RVT_N Location: 4 708-4 951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4996-5620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 996-5620 bp Feature: domain Description: GIIM Note: maturase Location: 5671-5905 bp Feature: domain Description: GIIM Note: maturase Location: 5671-5905 bp Feature: gene Location: 7285-8130 bp Feature: domain Description: TPR Location: 7453-7792 bp Feature: domain Description: TPR Location: 74 53-7792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TPR (smart00028)

Seq: JACNLT010000349.1 (21196 bp)
Overview 1 RT 1: 388-5040 bp Neighborhood of RT #1 [388, 5040] Cas1_I-II-III 23S_rRNA_IVP RVT-CRISPR Feature: gene Location: 388-1419 bp Feature: domain Description: Cas1_I-II-III Location: 397-1387 bp Feature: domain Description: Cas1_I-II-III Location: 397-1387 bp Feature: gene Location: 1698-2075 bp Feature: domain Description: 23S_rRNA_IVP Location: 1728-2040 bp Feature: domain Description: 23S_rRNA_IVP Location: 1728-2040 bp Feature: gene Location: 2184-3125 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2403-3000 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2403-3000 bp Feature: gene Location: 3182-3937 bp Feature: gene Location: 3934-5040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), 23S_rRNA_IVP (pfam05635), RVT-CRISPR

Seq: JACNLT010000430.1 (9993 bp)
Overview 1 RT 1: 284-2276 bp Neighborhood of RT #1 [284, 2276] RVT-GII Feature: gene Location: 284-643 bp Feature: gene Location: 791-1027 bp Feature: gene Location: 1254-1766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1518-1749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1518-1749 bp Feature: gene Location: 1852-2034 bp Feature: gene Location: 2109-2276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII