myRT

myRT report for GCA_014381605.1_ASM1438160v1

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Seq: JACNLI010000671.1 (19251 bp)
Overview 1 RT 1: 5044-10366 bp Neighborhood of RT #1 [5044, 10458] Type_II_cohesin Dockerin_II Type_II_cohesin Por_Secre_tail RVT_N RVT-GII ApbE LigA Feature: gene Location: 5044-6948 bp Feature: domain Description: Type_II_cohesin Location: 5584-5965 bp Feature: domain Description: Type_II_cohesin Location: 5584-5965 bp Feature: domain Description: Dockerin_II Location: 6022-6193 bp Feature: domain Description: Dockerin_II Location: 6022-61 93 bp Feature: domain Description: Type_II_cohesin Location: 6310-6622 bp Feature: domain Description: Type_II_cohesin Location: 631 0-6622 bp Feature: domain Description: Por_Secre_tail Location: 6682-6940 bp Feature: domain Description: Por_Secre_tail Location: 6682-6940 bp Feature: gene Location: 7400-7540 bp Feature: gene Location: 7653-8561 bp Feature: domain Description: RVT_N Location: 7665-7758 bp Feature: domain Description: RVT_N Location: 7665-7758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7854-8517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7854-851 7 bp Feature: gene Location: 8919-9962 bp Feature: domain Description: ApbE Location: 8952-9909 bp Feature: domain Description: ApbE Location: 8952-9909 bp Feature: gene Location: 10222-10458 bp Feature: domain Description: LigA Location: 10267-10366 bp Feature: domain Description: LigA Location: 1 0267-1 0366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Type_II_cohesin (cd08547), Dockerin_II (cd14254), Por_Secre_tail (TIGR04183), RVT_N (pfam13655), RVT-GII, ApbE (pfam02424), LigA (pfam07746)

Seq: JACNLI010001327.1 (5066 bp)
Overview 1 RT 1: 1846-5048 bp Neighborhood of RT #1 [1846, 5065] HpcH RVT-GII RRXRR Feature: gene Location: 1846-2640 bp Feature: domain Description: HpcH Location: 1852-2611 bp Feature: domain Description: HpcH Location: 1852 -2 611 bp Feature: gene Location: 2754-3077 bp Feature: gene Location: 3387-3800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3735-3789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3735-3789 bp Feature: gene Location: 3905-4180 bp Feature: gene Location: 4673-5065 bp Feature: domain Description: RRXRR Location: 4679-5048 bp Feature: domain Description: RRXRR Location: 4679-5048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HpcH (COG3836), RVT-GII, RRXRR (pfam14239)

Seq: JACNLI010000984.1 (3620 bp)
Overview 1 RT 1: 547-3465 bp Neighborhood of RT #1 [547, 3465] Phage_int_SAM_4 INT_IntI_C RVT-GII GIIM Feature: gene Location: 547-1407 bp Feature: domain Description: Phage_int_SAM_4 Location: 568-790 bp Feature: domain Description: Phage_int_SAM_4 Location: 568-790 bp Feature: domain Description: INT_IntI_C Location: 841-1348 bp Feature: domain Description: INT_IntI_C Location: 841-13 48 bp Feature: gene Location: 1562-1795 bp Feature: gene Location: 1984-3309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2305-2941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 05-2941 bp Feature: domain Description: GIIM Note: maturase Location: 3019-3229 bp Feature: domain Description: GIIM Note: maturase Location: 3 019-3 229 bp Feature: gene Location: 3319-3465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT-GII, GIIM (pfam08388)

Seq: JACNLI010000903.1 (8646 bp)
Overview 1 RT 1: 4993-8156 bp Neighborhood of RT #1 [4993, 8251] Phage_GP20 RVT-GII GIIM HNHc Feature: gene Location: 4993-5226 bp Feature: domain Description: Phage_GP20 Location: 5041-5200 bp Feature: domain Description: Phage_GP20 Location: 504 1-5200 bp Feature: gene Location: 5352-7013 bp Feature: gene Location: 7106-8251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7109-7466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7109-74 66 bp Feature: domain Description: GIIM Note: maturase Location: 7556-7784 bp Feature: domain Description: GIIM Note: maturase Location: 7556-7784 bp Feature: domain Description: HNHc Note: nucleases Location: 7988-8156 bp Feature: domain Description: HNHc Note: nucleases Location: 7988-8156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GP20 (pfam06810), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACNLI010000952.1 (9368 bp)
Overview 1 RT 1: 2676-5522 bp Neighborhood of RT #1 [2676, 5530] HTH_XRE RVT-Retrons RNase_HI_like DUF2283 Feature: gene Location: 2676-2939 bp Feature: gene Location: 2982-3284 bp Feature: domain Description: HTH_XRE Location: 2997-3168 bp Feature: domain Description: HTH_XRE Location: 2997-3168 bp Feature: gene Location: 3289-4824 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3418-3937 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3418-3937 bp Feature: domain Description: RNase_HI_like Location: 4249-4597 bp Feature: domain Description: RNase_HI_like Location: 4249-45 97 bp Feature: gene Location: 5004-5306 bp Feature: gene Location: 5288-5530 bp Feature: domain Description: DUF2283 Location: 5378-5522 bp Feature: domain Description: DUF2283 Location: 5 378-5 5 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, RNase_HI_like (cd09279), DUF2283 (pfam10049)

Seq: JACNLI010000263.1 (4009 bp)
Overview 1 RT 1: 253-3666 bp Neighborhood of RT #1 [253, 3719] RVT-GII RVT_N RVT-GII GIIM HNHc TIGR02436 Feature: gene Location: 253-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-910 bp Feature: gene Location: 1351-1482 bp Feature: gene Location: 1498-2040 bp Feature: domain Description: RVT_N Location: 1552-1798 bp Feature: domain Description: RVT_N Location: 1552-1798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1846-1987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1846 -1987 bp Feature: gene Location: 2435-3277 bp Feature: domain Description: GIIM Note: maturase Location: 2606-2807 bp Feature: domain Description: GIIM Note: maturase Location: 26 06 -2807 bp Feature: domain Description: HNHc Note: nucleases Location: 3017-3188 bp Feature: domain Description: HNHc Note: nucleases Location: 3017-3188 bp Feature: gene Location: 3504-3719 bp Feature: domain Description: TIGR02436 Location: 3525-3666 bp Feature: domain Description: TIGR02436 Location: 3525-36 6 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), TIGR02436 (four helix bundle protein)

Seq: JACNLI010000643.1 (22921 bp)
Overview 1 RT 1: 14368-19609 bp Neighborhood of RT #1 [14368, 19623] RVT-AbiA rnc fabF Feature: gene Location: 14368-15123 bp Feature: gene Location: 15224-15439 bp Feature: gene Location: 15456-17417 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 15951-16479 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 15951-1647 9 bp Feature: gene Location: 17505-18281 bp Feature: domain Description: rnc Location: 17589-18261 bp Feature: domain Description: rnc Location: 17 589-18261 bp Feature: gene Location: 18364-19623 bp Feature: domain Description: fabF Location: 18388-19609 bp Feature: domain Description: fabF Location: 18388-19609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA, rnc (PRK00102), fabF (TIGR03150)

Seq: JACNLI010000645.1 (8475 bp)
Overview 1 RT 1: 5836-8332 bp Neighborhood of RT #1 [5836, 8448] DUF4384 RVT_N RVT-GII Feature: gene Location: 5836-6654 bp Feature: domain Description: DUF4384 Location: 6271-6496 bp Feature: domain Description: DUF438 4 Location: 6271-6496 bp Feature: gene Location: 6726-6935 bp Feature: gene Location: 7294-8448 bp Feature: domain Description: RVT_N Location: 7363-7564 bp Feature: domain Description: RVT_N Location: 7363-7564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7654-8332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7654-8 332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4384 (pfam14326), RVT_N (pfam13655), RVT-GII

Seq: JACNLI010000297.1 (4197 bp)
Overview 1 RT 1: 140-3199 bp Neighborhood of RT #1 [140, 3199] RVT-DGRs Feature: gene Location: 140-1231 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 350-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 350-9 47 bp Feature: gene Location: 1511-2902 bp Feature: gene Location: 2915-3199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs