myRT

myRT report for GCA_014382665.1_ASM1438266v1

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Seq: JACNJH010000011.1 (3025 bp)
Overview 1 RT 1: 2-1804 bp Neighborhood of RT #1 [2, 1818] RVT_N RVT-GII Phd PIN_Pae0151-like Feature: gene Location: 2-151 bp Feature: gene Location: 310-765 bp Feature: domain Description: RVT_N Location: 367-610 bp Feature: domain Description: RVT_N Location: 367-61 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 655-757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 655-757 bp Feature: gene Location: 1159-1398 bp Feature: domain Description: Phd Location: 1162-1288 bp Feature: domain Description: Phd Location: 1 1 62-1 288 bp Feature: gene Location: 1399-1818 bp Feature: domain Description: PIN_Pae0151-like Location: 1417-1804 bp Feature: domain Description: PIN_Pae01 51 -like Location: 1 41 7-1 804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Phd (COG4118), PIN_Pae0151-like (cd09873)

Seq: JACNJH010000128.1 (50476 bp)
Overview 1 RT 1: 47631-50473 bp Neighborhood of RT #1 [47631, 50473] HicB RVT-GII GIIM Feature: gene Location: 47631-47960 bp Feature: domain Description: HicB Location: 47808-47940 bp Feature: domain Description: HicB Location: 47808-47940 bp Feature: gene Location: 48000-48155 bp Feature: gene Location: 48986-50137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49163-49784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49163-49784 bp Feature: domain Description: GIIM Note: maturase Location: 49865-50084 bp Feature: domain Description: GIIM Note: maturase Location: 49865-50084 bp Feature: gene Location: 50312-50473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), RVT-GII, GIIM (pfam08388)

Seq: JACNJH010000252.1 (8041 bp)
Overview 1 RT 1: 333-8040 bp Neighborhood of RT #1 [333, 8039] RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like RVT-UG1 COG2865 HSDR_N Feature: gene Location: 333-635 bp Feature: gene Location: 675-1970 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 690-1269 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 690-1269 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 1356-1920 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 13 56-1920 bp Feature: gene Location: 1967-5752 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2555-3047 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2555-3 047 bp Feature: gene Location: 5920-7422 bp Feature: domain Description: COG2865 Location: 5956-7417 bp Feature: domain Description: COG2865 Location: 5956-7417 bp Feature: gene Location: 7419-8039 bp Feature: domain Description: HSDR_N Location: 7455-8040 bp Feature: domain Description: HSDR_N Location: 7455-8040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_SonII-TRD2-CR2_like (cd17246), RVT-UG1, COG2865 (Predicted transcriptional regulator, contains HTH domain ), HSDR_N (pfam04313)