myRT

myRT report for GCA_014384465.1_ASM1438446v1

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Seq: JACNFU010000146.1 (7022 bp)
Overview 1 RT 1: 2-6957 bp Neighborhood of RT #1 [2, 7019] RVT-CRISPR-like DUF3883 COG3587 Feature: gene Location: 2-1534 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 20-740 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 20-740 bp Feature: gene Location: 1806-6155 bp Feature: domain Description: DUF3883 Location: 5811-6078 bp Feature: domain Description: DUF3883 Location: 581 1 -6078 bp Feature: gene Location: 6216-7019 bp Feature: domain Description: COG3587 Location: 6339-6957 bp Feature: domain Description: COG3587 Location: 6339-6957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, DUF3883 (pfam13020), COG3587 (Restriction endonuclease )

Seq: JACNFU010000310.1 (2638 bp)
Overview 1 RT 1: 71-2628 bp Neighborhood of RT #1 [71, 2636] Helicase_C RVT-GII Intron_maturas2 HNHc Feature: gene Location: 71-1072 bp Feature: domain Description: Helicase_C Location: 764-1055 bp Feature: domain Description: Helicase_C Location: 764-1055 bp Feature: gene Location: 1143-2636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1200-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 00-1932 bp Feature: domain Description: Intron_maturas2 Location: 2028-2271 bp Feature: domain Description: Intron_maturas2 Location: 2 02 8-2 2 71 bp Feature: domain Description: HNHc Note: nucleases Location: 2469-2628 bp Feature: domain Description: HNHc Note: nucleases Location: 2 469-2 62 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Helicase_C (pfam00271), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JACNFU010000698.1 (4135 bp)
Overview 1 RT 1: 103-3193 bp Neighborhood of RT #1 [103, 3198] RVT-GII GIIM PitA Feature: gene Location: 103-1485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 3 -1102 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1390 bp Feature: domain Description: GIIM Note: maturase Location: 1183 -13 90 bp Feature: gene Location: 1928-2158 bp Feature: gene Location: 2215-3198 bp Feature: domain Description: PitA Location: 2227-3193 bp Feature: domain Description: PitA Location: 2227-3 193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PitA (COG0306)

Seq: JACNFU010000411.1 (7116 bp)
Overview 1 RT 1: 1-2221 bp Neighborhood of RT #1 [1, 2232] RVT-GII PRK00024 Feature: gene Location: 1-1044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301-988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301-988 bp Feature: gene Location: 1110-1391 bp Feature: gene Location: 1615-2232 bp Feature: domain Description: PRK00024 Location: 1669-2221 bp Feature: domain Description: PRK00024 Location: 1669-2221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK00024 (DNA repair protein RadC)

Seq: JACNFU010000582.1 (5216 bp)
Overview 1 RT 1: 3-3874 bp Neighborhood of RT #1 [3, 3874] RVT-AbiP2 TIR_2 Feature: gene Location: 3-260 bp Feature: gene Location: 262-1797 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 718-1165 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 718-1165 bp Feature: gene Location: 2000-2434 bp Feature: domain Description: TIR_2 Location: 2024-2315 bp Feature: domain Description: TIR_2 Location: 2024-2315 bp Feature: gene Location: 2516-3874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, TIR_2 (pfam13676)