myRT

myRT report for GCA_014493895.1_ASM1449389v1

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Seq: JACUWL010000025.1 Escherichia coli strain AI3195 25, whole genome shotgun sequence (75998 bp)
Overview 1 RT 1: 47864-52147 bp Neighborhood of RT #1 [47864, 52155] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 47864-48769 bp Feature: gene Location: 48907-49098 bp Feature: gene Location: 49255-49794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49585-49663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49585-49663 bp Feature: gene Location: 49822-50343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49828-50110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49828-501 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 50158-50338 bp Feature: domain Description: GIIM Note: maturase Location: 501 58-50338 bp Feature: gene Location: 50665-50853 bp Feature: gene Location: 50893-52155 bp Feature: domain Description: YesM Location: 51406-52147 bp Feature: domain Description: YesM Location: 51 406-521 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACUWL010000007.1 Escherichia coli strain AI3195 7, whole genome shotgun sequence (162719 bp)
Overview 1 RT 1: 28739-34982 bp Neighborhood of RT #1 [28739, 35119] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 28739-29005 bp Feature: domain Description: Phage_integrase Location: 28805-28901 bp Feature: domain Description: Phage_integrase Location: 2 8805-2 8901 bp Feature: gene Location: 29088-29558 bp Feature: gene Location: 29905-33114 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30433-30922 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30433-3092 2 bp Feature: domain Description: nitrilase Location: 32428-33025 bp Feature: domain Description: nitrilase Location: 32 42 8-3302 5 bp Feature: gene Location: 33409-34212 bp Feature: domain Description: AbiEi_3_N Location: 33442-33703 bp Feature: domain Description: AbiEi_3_N Location: 33442 -33703 bp Feature: domain Description: AbiEi_3 Location: 33715-34171 bp Feature: domain Description: AbiEi_3 Location: 33715-34171 bp Feature: gene Location: 34199-35119 bp Feature: domain Description: AbiEii Location: 34241-34982 bp Feature: domain Description: AbiEii Location: 342 41-34982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JACUWL010000075.1 Escherichia coli strain AI3195 75, whole genome shotgun sequence (6562 bp)
Overview 1 RT 1: 2-5080 bp Neighborhood of RT #1 [2, 5085] RVT-GII Intron_maturas2 HNHc psiB Feature: gene Location: 2-211 bp Feature: gene Location: 881-1090 bp Feature: gene Location: 1225-3126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492-2323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492-23 23 bp Feature: domain Description: Intron_maturas2 Location: 2437-2695 bp Feature: domain Description: Intron_maturas2 Location: 243 7-2695 bp Feature: domain Description: HNHc Note: nucleases Location: 2869-3031 bp Feature: domain Description: HNHc Note: nucleases Location: 2869-3 03 1 bp Feature: gene Location: 3354-4598 bp Feature: gene Location: 4651-5085 bp Feature: domain Description: psiB Location: 4654-5080 bp Feature: domain Description: psiB Location: 4654-5080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), psiB (PRK13701)

Seq: JACUWL010000081.1 Escherichia coli strain AI3195 81, whole genome shotgun sequence (4744 bp)
Overview 1 RT 1: 661-3987 bp Neighborhood of RT #1 [661, 3987] HTH_XRE RVT-Retrons FRG Feature: gene Location: 661-1053 bp Feature: gene Location: 1090-1410 bp Feature: domain Description: HTH_XRE Location: 1108-1264 bp Feature: domain Description: HTH_XRE Location: 1108-1264 bp Feature: gene Location: 1376-2326 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1556-2099 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1556-2099 bp Feature: gene Location: 2435-3799 bp Feature: domain Description: FRG Location: 3002-3287 bp Feature: domain Description: FRG Location: 3002-3287 bp Feature: gene Location: 3838-3987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)

Seq: JACUWL010000092.1 Escherichia coli strain AI3195 92, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-15 73 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624-185 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)