myRT

myRT report for GCA_014493925.1_ASM1449392v1

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Seq: JACUWK010000110.1 Escherichia coli strain AI3155 110, whole genome shotgun sequence (2455 bp)
Overview 1 RT 1: 149-1955 bp Neighborhood of RT #1 [149, 2050] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 149-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 6-1 247 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: Intron_maturas2 Location: 1 361 -1 61 9 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Feature: domain Description: HNHc Note: nucleases Location: 1 793-1 955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JACUWK010000005.1 Escherichia coli strain AI3155 5, whole genome shotgun sequence (193265 bp)
Overview 1 RT 1: 2-4758 bp Neighborhood of RT #1 [2, 4760] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2-145 bp Feature: gene Location: 730-2334 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1021-1612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102 1-1612 bp Feature: domain Description: TIR_2 Location: 1939-2227 bp Feature: domain Description: TIR_2 Location: 1939-2 2 2 7 bp Feature: gene Location: 2694-2954 bp Feature: domain Description: PRK10597 Location: 2697-2937 bp Feature: domain Description: PRK10597 Location: 2 697-2 937 bp Feature: gene Location: 3174-4760 bp Feature: domain Description: prfC Location: 3192-4758 bp Feature: domain Description: prfC Location: 3192 -4758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: JACUWK010000059.1 Escherichia coli strain AI3155 59, whole genome shotgun sequence (16653 bp)
Overview 1 RT 1: 1-3020 bp 2 RT 2: 12221-16203 bp Neighborhood of RT #1 [1, 3037] RVT-GII GIIM PHA02517 FadR Neighborhood of RT #2 [12221, 16229] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 1-297 bp Feature: gene Location: 591-2114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1596 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1869 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1869 bp Feature: gene Location: 2243-2683 bp Feature: domain Description: PHA02517 Location: 2246-2654 bp Feature: domain Description: PHA02517 Location: 2246-2654 bp Feature: gene Location: 2903-3037 bp Feature: domain Description: FadR Location: 2918-3020 bp Feature: domain Description: FadR Location: 2918-3 020 bp Feature: gene Location: 12221-13252 bp Feature: domain Description: Asparaginase_2 Location: 12311-13244 bp Feature: domain Description: Asparaginase_2 Location: 123 11-13 244 bp Feature: gene Location: 13579-13728 bp Feature: gene Location: 13776-14222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14082-14184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14082-14184 bp Feature: gene Location: 14444-14815 bp Feature: gene Location: 14868-16229 bp Feature: domain Description: DcuC Location: 14871-16203 bp Feature: domain Description: DcuC Location: 14871-16203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), FadR (COG2186), Asparaginase_2 (pfam01112), DcuC (TIGR00771)

Seq: JACUWK010000007.1 Escherichia coli strain AI3155 7, whole genome shotgun sequence (171186 bp)
Overview 1 RT 1: 149400-153683 bp Neighborhood of RT #1 [149400, 153691] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 149400-150305 bp Feature: gene Location: 150443-150634 bp Feature: gene Location: 150791-151330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151121-151199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151121-151199 bp Feature: gene Location: 151358-151879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151364-151646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151364 -15164 6 bp Feature: domain Description: GIIM Note: maturase Location: 151694-151874 bp Feature: domain Description: GIIM Note: maturase Location: 151694 -151874 bp Feature: gene Location: 152201-152389 bp Feature: gene Location: 152429-153691 bp Feature: domain Description: YesM Location: 152942-153683 bp Feature: domain Description: YesM Location: 15294 2-153683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACUWK010000009.1 Escherichia coli strain AI3155 9, whole genome shotgun sequence (165884 bp)
Overview 1 RT 1: 137374-143405 bp Neighborhood of RT #1 [137374, 143405] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 137374-138294 bp Feature: domain Description: AbiEii Location: 137416-138157 bp Feature: domain Description: AbiEii Location: 137416-13815 7 bp Feature: gene Location: 138281-139084 bp Feature: domain Description: AbiEi_3_N Location: 138314-138575 bp Feature: domain Description: AbiEi_3_N Location: 138314-1385 75 bp Feature: domain Description: AbiEi_3 Location: 138587-139043 bp Feature: domain Description: AbiEi_3 Location: 1385 87-139043 bp Feature: gene Location: 139379-142588 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 139907-140396 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 139907-140396 bp Feature: domain Description: nitrilase Location: 141902-142499 bp Feature: domain Description: nitrilase Location: 141902-142499 bp Feature: gene Location: 142749-142889 bp Feature: domain Description: Phage_ASH Location: 142776-142869 bp Feature: domain Description: Phage_ASH Location: 142776-142869 bp Feature: gene Location: 142935-143405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)