myRT

myRT report for GCA_014493985.1_ASM1449398v1

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Seq: JACUWF010000019.1 Escherichia coli strain AI2612 19, whole genome shotgun sequence (84348 bp)
Overview 1 RT 1: 12205-14693 bp Neighborhood of RT #1 [12205, 14758] RVT-GII Inovirus_Gp2 Feature: gene Location: 12205-12378 bp Feature: gene Location: 12412-12720 bp Feature: gene Location: 12707-13384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12821-13373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2821 -1 3373 bp Feature: gene Location: 13582-13731 bp Feature: gene Location: 14195-14758 bp Feature: domain Description: Inovirus_Gp2 Location: 14252-14693 bp Feature: domain Description: Inovirus_Gp2 Location: 1 4252-1 4693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Inovirus_Gp2 (pfam11726)

Seq: JACUWF010000003.1 Escherichia coli strain AI2612 3, whole genome shotgun sequence (309096 bp)
Overview 1 RT 1: 800-4270 bp Neighborhood of RT #1 [800, 4377] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 800-1102 bp Feature: domain Description: Arm-DNA-bind_3 Location: 809-1061 bp Feature: domain Description: Arm-DNA-bind_3 Location: 809-1061 bp Feature: gene Location: 1286-1531 bp Feature: gene Location: 1557-2489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1659-2253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1659-2 2 53 bp Feature: gene Location: 2491-3477 bp Feature: gene Location: 4105-4377 bp Feature: domain Description: PRK09678 Location: 4114-4270 bp Feature: domain Description: PRK09678 Location: 4114-42 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JACUWF010000043.1 Escherichia coli strain AI2612 43, whole genome shotgun sequence (25454 bp)
Overview 1 RT 1: 882-6087 bp Neighborhood of RT #1 [882, 6092] RVT-GII Intron_maturas2 HNHc psiB Feature: gene Location: 882-1196 bp Feature: gene Location: 1888-2097 bp Feature: gene Location: 2232-4133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2499-3330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2499-3 3 3 0 bp Feature: domain Description: Intron_maturas2 Location: 3444-3702 bp Feature: domain Description: Intron_maturas2 Location: 3 444-3 702 bp Feature: domain Description: HNHc Note: nucleases Location: 3876-4038 bp Feature: domain Description: HNHc Note: nucleases Location: 3 876-403 8 bp Feature: gene Location: 4361-5605 bp Feature: gene Location: 5658-6092 bp Feature: domain Description: psiB Location: 5661-6087 bp Feature: domain Description: psiB Location: 5661-6087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), psiB (PRK13701)

Seq: JACUWF010000007.1 Escherichia coli strain AI2612 7, whole genome shotgun sequence (174758 bp)
Overview 1 RT 1: 23835-28126 bp Neighborhood of RT #1 [23835, 28126] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23835-25097 bp Feature: domain Description: YesM Location: 24348-25089 bp Feature: domain Description: YesM Location: 24 34 8-25089 bp Feature: gene Location: 25127-25297 bp Feature: gene Location: 25647-26168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25653-25935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25653-25935 bp Feature: domain Description: GIIM Note: maturase Location: 25983-26163 bp Feature: domain Description: GIIM Note: maturase Location: 25983-26163 bp Feature: gene Location: 26196-26735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26526-26604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26526-26604 bp Feature: gene Location: 26766-26963 bp Feature: gene Location: 27221-28126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACUWF010000077.1 Escherichia coli strain AI2612 77, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)