myRT

myRT report for GCA_014494005.1_ASM1449400v1

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Seq: JACUWG010000105.1 Escherichia coli strain AI2783 105, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACUWG010000014.1 Escherichia coli strain AI2783 14, whole genome shotgun sequence (117532 bp)
Overview 1 RT 1: 113449-116775 bp Neighborhood of RT #1 [113449, 116775] HTH_XRE RVT-Retrons FRG Feature: gene Location: 113449-113841 bp Feature: gene Location: 113878-114198 bp Feature: domain Description: HTH_XRE Location: 113893-114052 bp Feature: domain Description: HTH_XRE Location: 113893-114052 bp Feature: gene Location: 114164-115114 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 114344-114887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 114344-114887 bp Feature: gene Location: 115223-116587 bp Feature: domain Description: FRG Location: 115790-116075 bp Feature: domain Description: FRG Location: 115790-116075 bp Feature: gene Location: 116626-116775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)

Seq: JACUWG010000028.1 Escherichia coli strain AI2783 28, whole genome shotgun sequence (54339 bp)
Overview 1 RT 1: 24169-28460 bp Neighborhood of RT #1 [24169, 28460] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 24169-25431 bp Feature: domain Description: YesM Location: 24682-25423 bp Feature: domain Description: YesM Location: 24682-25423 bp Feature: gene Location: 25461-25631 bp Feature: gene Location: 25981-26502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25987-26269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25987-26269 bp Feature: domain Description: GIIM Note: maturase Location: 26317-26497 bp Feature: domain Description: GIIM Note: maturase Location: 263 17-26497 bp Feature: gene Location: 26530-27069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26860-26938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26860-2693 8 bp Feature: gene Location: 27100-27297 bp Feature: gene Location: 27555-28460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACUWG010000005.1 Escherichia coli strain AI2783 5, whole genome shotgun sequence (162719 bp)
Overview 1 RT 1: 127601-133632 bp Neighborhood of RT #1 [127601, 133632] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 127601-128521 bp Feature: domain Description: AbiEii Location: 127643-128384 bp Feature: domain Description: AbiEii Location: 12764 3-128384 bp Feature: gene Location: 128508-129311 bp Feature: domain Description: AbiEi_3_N Location: 128541-128802 bp Feature: domain Description: AbiEi_3_N Location: 12854 1-128802 bp Feature: domain Description: AbiEi_3 Location: 128814-129270 bp Feature: domain Description: AbiEi_3 Location: 128814 -129270 bp Feature: gene Location: 129606-132815 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130134-130623 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130134 -130623 bp Feature: domain Description: nitrilase Location: 132129-132726 bp Feature: domain Description: nitrilase Location: 132129-132726 bp Feature: gene Location: 132976-133116 bp Feature: domain Description: Phage_ASH Location: 133003-133096 bp Feature: domain Description: Phage_ASH Location: 133003-133096 bp Feature: gene Location: 133162-133632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)