myRT

myRT report for GCA_014494195.1_ASM1449419v1

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Seq: JACUVU010000104.1 Escherichia coli strain AI1494 104, whole genome shotgun sequence (2206 bp)
Overview 1 RT 1: 93-2203 bp Neighborhood of RT #1 [93, 2203] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACUVU010000049.1 Escherichia coli strain AI1494 49, whole genome shotgun sequence (25858 bp)
Overview 1 RT 1: 11123-16021 bp Neighborhood of RT #1 [11123, 16021] PRK13704 RVT-GII Intron_maturas2 HNHc PRK10276 Feature: gene Location: 11123-11719 bp Feature: gene Location: 11716-12948 bp Feature: domain Description: PRK13704 Location: 12595-12940 bp Feature: domain Description: PRK13704 Location: 12 595-12 940 bp Feature: gene Location: 13140-15041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13407-14238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13407-142 38 bp Feature: domain Description: Intron_maturas2 Location: 14352-14610 bp Feature: domain Description: Intron_maturas2 Location: 14352 -14610 bp Feature: domain Description: HNHc Note: nucleases Location: 14784-14946 bp Feature: domain Description: HNHc Note: nucleases Location: 14784-14946 bp Feature: gene Location: 15399-15818 bp Feature: domain Description: PRK10276 Location: 15438-15804 bp Feature: domain Description: PRK102 76 Location: 15438-15804 bp Feature: gene Location: 15854-16021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13704 (plasmid SOS inhibition protein A; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JACUVU010000005.1 Escherichia coli strain AI1494 5, whole genome shotgun sequence (193265 bp)
Overview 1 RT 1: 2-4758 bp Neighborhood of RT #1 [2, 4760] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2-145 bp Feature: gene Location: 730-2334 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1021-1612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1021-1612 bp Feature: domain Description: TIR_2 Location: 1939-2227 bp Feature: domain Description: TIR_2 Location: 193 9-2227 bp Feature: gene Location: 2694-2954 bp Feature: domain Description: PRK10597 Location: 2697-2937 bp Feature: domain Description: PRK10597 Location: 2697-293 7 bp Feature: gene Location: 3174-4760 bp Feature: domain Description: prfC Location: 3192-4758 bp Feature: domain Description: prfC Location: 3 192-4758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: JACUVU010000006.1 Escherichia coli strain AI1494 6, whole genome shotgun sequence (177287 bp)
Overview 1 RT 1: 149400-153683 bp Neighborhood of RT #1 [149400, 153691] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 149400-150305 bp Feature: gene Location: 150443-150634 bp Feature: gene Location: 150791-151330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151121-151199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151121-151199 bp Feature: gene Location: 151358-151879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151364-151646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151364 -15164 6 bp Feature: domain Description: GIIM Note: maturase Location: 151694-151874 bp Feature: domain Description: GIIM Note: maturase Location: 151694 -151874 bp Feature: gene Location: 152201-152389 bp Feature: gene Location: 152429-153691 bp Feature: domain Description: YesM Location: 152942-153683 bp Feature: domain Description: YesM Location: 15294 2-153683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACUVU010000060.1 Escherichia coli strain AI1494 60, whole genome shotgun sequence (16267 bp)
Overview 1 RT 1: 10015-13997 bp Neighborhood of RT #1 [10015, 14023] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 10015-11046 bp Feature: domain Description: Asparaginase_2 Location: 10105-11038 bp Feature: domain Description: Asparaginase_2 Location: 10105 -11038 bp Feature: gene Location: 11373-11522 bp Feature: gene Location: 11570-12016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11876-11978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11876-11978 bp Feature: gene Location: 12238-12609 bp Feature: gene Location: 12662-14023 bp Feature: domain Description: DcuC Location: 12665-13997 bp Feature: domain Description: DcuC Location: 12665 -13997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: JACUVU010000008.1 Escherichia coli strain AI1494 8, whole genome shotgun sequence (165884 bp)
Overview 1 RT 1: 22131-28374 bp Neighborhood of RT #1 [22131, 28511] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22131-22397 bp Feature: domain Description: Phage_integrase Location: 22197-22293 bp Feature: domain Description: Phage_integrase Location: 22197-22293 bp Feature: gene Location: 22480-22950 bp Feature: gene Location: 23297-26506 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23825-24314 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23825-24314 bp Feature: domain Description: nitrilase Location: 25820-26417 bp Feature: domain Description: nitrilase Location: 25820-26 417 bp Feature: gene Location: 26801-27604 bp Feature: domain Description: AbiEi_3_N Location: 26834-27095 bp Feature: domain Description: AbiEi_3_N Location: 26 834-27095 bp Feature: domain Description: AbiEi_3 Location: 27107-27563 bp Feature: domain Description: AbiEi_3 Location: 27107-2756 3 bp Feature: gene Location: 27591-28511 bp Feature: domain Description: AbiEii Location: 27633-28374 bp Feature: domain Description: AbiEii Location: 276 33-28374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)