myRT

myRT report for GCA_014494205.1_ASM1449420v1

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Seq: JACUVV010000102.1 Escherichia coli strain AI1496 102, whole genome shotgun sequence (2206 bp)
Overview 1 RT 1: 93-2203 bp Neighborhood of RT #1 [93, 2203] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACUVV010000005.1 Escherichia coli strain AI1496 5, whole genome shotgun sequence (193265 bp)
Overview 1 RT 1: 2-4758 bp Neighborhood of RT #1 [2, 4760] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2-145 bp Feature: gene Location: 730-2334 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1021-1612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102 1-1612 bp Feature: domain Description: TIR_2 Location: 1939-2227 bp Feature: domain Description: TIR_2 Location: 1939-2 2 2 7 bp Feature: gene Location: 2694-2954 bp Feature: domain Description: PRK10597 Location: 2697-2937 bp Feature: domain Description: PRK10597 Location: 2 697-2 937 bp Feature: gene Location: 3174-4760 bp Feature: domain Description: prfC Location: 3192-4758 bp Feature: domain Description: prfC Location: 3192 -4758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: JACUVV010000051.1 Escherichia coli strain AI1496 51, whole genome shotgun sequence (25866 bp)
Overview 1 RT 1: 10049-14744 bp Neighborhood of RT #1 [10049, 14744] PRK10276 RVT-GII Intron_maturas2 HNHc PRK13704 Feature: gene Location: 10049-10468 bp Feature: domain Description: PRK10276 Location: 10088-10454 bp Feature: domain Description: PRK10276 Location: 10088-10454 bp Feature: gene Location: 10482-10691 bp Feature: gene Location: 10826-12727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11093-11924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11093 -11924 bp Feature: domain Description: Intron_maturas2 Location: 12038-12296 bp Feature: domain Description: Intron_maturas2 Location: 1203 8-12296 bp Feature: domain Description: HNHc Note: nucleases Location: 12470-12632 bp Feature: domain Description: HNHc Note: nucleases Location: 12470-1263 2 bp Feature: gene Location: 12955-14151 bp Feature: domain Description: PRK13704 Location: 13798-14143 bp Feature: domain Description: PRK13 704 Location: 13 798-14143 bp Feature: gene Location: 14148-14744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13704 (plasmid SOS inhibition protein A; Provisional)

Seq: JACUVV010000006.1 Escherichia coli strain AI1496 6, whole genome shotgun sequence (177253 bp)
Overview 1 RT 1: 23563-27854 bp Neighborhood of RT #1 [23563, 27854] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23563-24825 bp Feature: domain Description: YesM Location: 24076-24817 bp Feature: domain Description: YesM Location: 24 076-24 817 bp Feature: gene Location: 24855-25025 bp Feature: gene Location: 25375-25896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25381-25663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25381-25663 bp Feature: domain Description: GIIM Note: maturase Location: 25711-25891 bp Feature: domain Description: GIIM Note: maturase Location: 25711-25891 bp Feature: gene Location: 25924-26463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26254-26332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26254 -26332 bp Feature: gene Location: 26494-26691 bp Feature: gene Location: 26949-27854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACUVV010000068.1 Escherichia coli strain AI1496 68, whole genome shotgun sequence (9951 bp)
Overview 1 RT 1: 2245-6245 bp Neighborhood of RT #1 [2245, 6253] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2245-3606 bp Feature: domain Description: DcuC Location: 2248-3580 bp Feature: domain Description: DcuC Location: 2248-35 80 bp Feature: gene Location: 3659-4030 bp Feature: gene Location: 4252-4698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4558-4660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 5 8-4660 bp Feature: gene Location: 4746-4895 bp Feature: gene Location: 5222-6253 bp Feature: domain Description: Asparaginase_2 Location: 5312-6245 bp Feature: domain Description: Asparaginase_2 Location: 5 312-6245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: JACUVV010000008.1 Escherichia coli strain AI1496 8, whole genome shotgun sequence (165884 bp)
Overview 1 RT 1: 22131-28374 bp Neighborhood of RT #1 [22131, 28511] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22131-22397 bp Feature: domain Description: Phage_integrase Location: 22197-22293 bp Feature: domain Description: Phage_integrase Location: 22197-22293 bp Feature: gene Location: 22480-22950 bp Feature: gene Location: 23297-26506 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23825-24314 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23825-24314 bp Feature: domain Description: nitrilase Location: 25820-26417 bp Feature: domain Description: nitrilase Location: 25820-26 417 bp Feature: gene Location: 26801-27604 bp Feature: domain Description: AbiEi_3_N Location: 26834-27095 bp Feature: domain Description: AbiEi_3_N Location: 26 834-27095 bp Feature: domain Description: AbiEi_3 Location: 27107-27563 bp Feature: domain Description: AbiEi_3 Location: 27107-2756 3 bp Feature: gene Location: 27591-28511 bp Feature: domain Description: AbiEii Location: 27633-28374 bp Feature: domain Description: AbiEii Location: 276 33-28374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)