myRT

myRT report for GCA_014494365.1_ASM1449436v1

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Seq: JACUZE010000017.1 Escherichia coli strain FF2320 17, whole genome shotgun sequence (85597 bp)
Overview 1 RT 1: 72898-79357 bp Neighborhood of RT #1 [72898, 79365] RVT-GII PinE Feature: gene Location: 72898-76935 bp Feature: gene Location: 77084-77317 bp Feature: gene Location: 77368-78855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77773-78463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77773-78463 bp Feature: gene Location: 78741-79112 bp Feature: gene Location: 79147-79365 bp Feature: domain Description: PinE Location: 79150-79357 bp Feature: domain Description: PinE Location: 791 50-79357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961)

Seq: JACUZE010000003.1 Escherichia coli strain FF2320 3, whole genome shotgun sequence (309087 bp)
Overview 1 RT 1: 305161-308247 bp Neighborhood of RT #1 [305161, 308288] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 305161-305310 bp Feature: gene Location: 305611-306597 bp Feature: gene Location: 306599-307531 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 306701-307295 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 306701-3072 95 bp Feature: gene Location: 307557-307802 bp Feature: gene Location: 307986-308288 bp Feature: domain Description: Arm-DNA-bind_3 Location: 307995-308247 bp Feature: domain Description: Arm-DNA-bind_3 Location: 307995-3082 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: JACUZE010000047.1 Escherichia coli strain FF2320 47, whole genome shotgun sequence (19589 bp)
Overview 1 RT 1: 14702-17754 bp Neighborhood of RT #1 [14702, 17754] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 14702-15124 bp Feature: domain Description: DUF1380 Location: 14705-14999 bp Feature: domain Description: DUF13 80 Location: 14705-14999 bp Feature: gene Location: 15176-15370 bp Feature: gene Location: 15625-17292 bp Feature: domain Description: RVT_N Location: 15673-15910 bp Feature: domain Description: RVT_N Location: 15673 -15910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15961-16603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15961-16603 bp Feature: domain Description: GIIM Note: maturase Location: 16654-16888 bp Feature: domain Description: GIIM Note: maturase Location: 16654-16888 bp Feature: domain Description: HNHc Note: nucleases Location: 17098-17257 bp Feature: domain Description: HNHc Note: nucleases Location: 17098-17257 bp Feature: gene Location: 17329-17475 bp Feature: gene Location: 17572-17754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACUZE010000078.1 Escherichia coli strain FF2320 78, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACUZE010000009.1 Escherichia coli strain FF2320 9, whole genome shotgun sequence (179777 bp)
Overview 1 RT 1: 153029-157312 bp Neighborhood of RT #1 [153029, 157320] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 153029-153934 bp Feature: gene Location: 154072-154263 bp Feature: gene Location: 154420-154959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154750-154828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 475 0-15 4828 bp Feature: gene Location: 154987-155508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154993-155275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 4993-15 5 275 bp Feature: domain Description: GIIM Note: maturase Location: 155323-155503 bp Feature: domain Description: GIIM Note: maturase Location: 15 5 323-15 5 5 03 bp Feature: gene Location: 155830-156018 bp Feature: gene Location: 156058-157320 bp Feature: domain Description: YesM Location: 156571-157312 bp Feature: domain Description: YesM Location: 15 65 71-15 7312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)