myRT

myRT report for GCA_014494485.1_ASM1449448v1

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Seq: JACUYW010000021.1 Escherichia coli strain BV313 21, whole genome shotgun sequence (77157 bp)
Overview 1 RT 1: 800-4270 bp Neighborhood of RT #1 [800, 4377] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 800-1102 bp Feature: domain Description: Arm-DNA-bind_3 Location: 809-1061 bp Feature: domain Description: Arm-DNA-bind_3 Location: 809-1 061 bp Feature: gene Location: 1286-1531 bp Feature: gene Location: 1557-2489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1659-2253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 659-2253 bp Feature: gene Location: 2491-3477 bp Feature: gene Location: 4105-4377 bp Feature: domain Description: PRK09678 Location: 4114-4270 bp Feature: domain Description: PRK09678 Location: 41 1 4-4270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JACUYW010000022.1 Escherichia coli strain BV313 22, whole genome shotgun sequence (72009 bp)
Overview 1 RT 1: 16017-19474 bp Neighborhood of RT #1 [16017, 19474] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 16017-16181 bp Feature: gene Location: 16215-17717 bp Feature: domain Description: PRK13889 Location: 16218-16797 bp Feature: domain Description: PRK13889 Location: 162 18-16797 bp Feature: gene Location: 17794-18894 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17935-18487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17935-18487 bp Feature: gene Location: 18887-19168 bp Feature: domain Description: HTH_XRE Location: 18902-19067 bp Feature: domain Description: HTH_XRE Location: 18902 -19067 bp Feature: gene Location: 19259-19474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: JACUYW010000042.1 Escherichia coli strain BV313 42, whole genome shotgun sequence (34950 bp)
Overview 1 RT 1: 14984-21436 bp Neighborhood of RT #1 [14984, 21436] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 14984-15289 bp Feature: gene Location: 16172-18448 bp Feature: domain Description: AAA_15 Location: 16205-17213 bp Feature: domain Description: AAA_15 Location: 16205-17213 bp Feature: gene Location: 18563-19663 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18746-19274 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18746-19274 bp Feature: gene Location: 20319-21155 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 20808-20979 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 20808-20979 bp Feature: gene Location: 21185-21436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: JACUYW010000046.1 Escherichia coli strain BV313 46, whole genome shotgun sequence (25967 bp)
Overview 1 RT 1: 18054-22952 bp Neighborhood of RT #1 [18054, 22952] PRK13704 RVT-GII Intron_maturas2 HNHc PRK10276 Feature: gene Location: 18054-18650 bp Feature: gene Location: 18647-19879 bp Feature: domain Description: PRK13704 Location: 19526-19871 bp Feature: domain Description: PRK13704 Location: 19526-19871 bp Feature: gene Location: 20071-21972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20338-21169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20338-21169 bp Feature: domain Description: Intron_maturas2 Location: 21283-21541 bp Feature: domain Description: Intron_maturas2 Location: 21283-2154 1 bp Feature: domain Description: HNHc Note: nucleases Location: 21715-21877 bp Feature: domain Description: HNHc Note: nucleases Location: 21715-21877 bp Feature: gene Location: 22330-22749 bp Feature: domain Description: PRK10276 Location: 22369-22735 bp Feature: domain Description: PRK10276 Location: 22369-22735 bp Feature: gene Location: 22785-22952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13704 (plasmid SOS inhibition protein A; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JACUYW010000007.1 Escherichia coli strain BV313 7, whole genome shotgun sequence (177957 bp)
Overview 1 RT 1: 23826-28117 bp Neighborhood of RT #1 [23826, 28117] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23826-25088 bp Feature: domain Description: YesM Location: 24339-25080 bp Feature: domain Description: YesM Location: 24339-25 080 bp Feature: gene Location: 25118-25288 bp Feature: gene Location: 25638-26159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25644-25926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 644-25 926 bp Feature: domain Description: GIIM Note: maturase Location: 25974-26154 bp Feature: domain Description: GIIM Note: maturase Location: 25 974-2615 4 bp Feature: gene Location: 26187-26726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26517-26595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265 17-265 95 bp Feature: gene Location: 26757-26954 bp Feature: gene Location: 27212-28117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACUYW010000084.1 Escherichia coli strain BV313 84, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-16 6 2 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)