myRT

myRT report for GCA_014494555.1_ASM1449455v1

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Seq: JACUYV010000114.1 Escherichia coli strain BP6308 114, whole genome shotgun sequence (13138 bp)
Overview 1 RT 1: 798-3925 bp Neighborhood of RT #1 [798, 3925] Arm-DNA-bind_3 RVT-Retrons Feature: gene Location: 798-1100 bp Feature: domain Description: Arm-DNA-bind_3 Location: 807-1059 bp Feature: domain Description: Arm-DNA-bind_3 Location: 807-1 059 bp Feature: gene Location: 1284-1529 bp Feature: gene Location: 1555-2487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1657-2251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 657-2251 bp Feature: gene Location: 2489-3475 bp Feature: gene Location: 3776-3925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons

Seq: JACUYV010000013.1 Escherichia coli strain BP6308 13, whole genome shotgun sequence (61283 bp)
Overview 1 RT 1: 23004-27295 bp Neighborhood of RT #1 [23004, 27295] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23004-24266 bp Feature: domain Description: YesM Location: 23517-24258 bp Feature: domain Description: YesM Location: 2 3517-2 42 58 bp Feature: gene Location: 24296-24466 bp Feature: gene Location: 24816-25337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24822-25104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 482 2 -2 5104 bp Feature: domain Description: GIIM Note: maturase Location: 25152-25332 bp Feature: domain Description: GIIM Note: maturase Location: 2 5152 -2 5332 bp Feature: gene Location: 25365-25904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25695-25773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5695-2 5773 bp Feature: gene Location: 25935-26132 bp Feature: gene Location: 26390-27295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACUYV010000263.1 Escherichia coli strain BP6308 263, whole genome shotgun sequence (3630 bp)
Overview 1 RT 1: 103-3584 bp Neighborhood of RT #1 [103, 3586] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 103-429 bp Feature: domain Description: InsE Location: 106-427 bp Feature: domain Description: InsE Location: 106-427 bp Feature: gene Location: 429-908 bp Feature: domain Description: PHA02517 Location: 489-843 bp Feature: domain Description: PHA02517 Location: 489-843 bp Feature: gene Location: 1500-3023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1773-2505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1773 -2505 bp Feature: domain Description: GIIM Note: maturase Location: 2580-2778 bp Feature: domain Description: GIIM Note: maturase Location: 2580-2778 bp Feature: gene Location: 3200-3586 bp Feature: domain Description: PHA02517 Location: 3203-3584 bp Feature: domain Description: PHA02517 Location: 3 203 -3 584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JACUYV010000071.1 Escherichia coli strain BP6308 71, whole genome shotgun sequence (20974 bp)
Overview 1 RT 1: 17399-20570 bp Neighborhood of RT #1 [17399, 20572] PRK10276 RVT-GII DDE_Tnp_IS1 Feature: gene Location: 17399-18082 bp Feature: domain Description: PRK10276 Location: 17702-18065 bp Feature: domain Description: PRK10276 Location: 17702-18065 bp Feature: gene Location: 18136-18738 bp Feature: gene Location: 18713-19723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18719-19331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18719-19331 bp Feature: gene Location: 19846-20058 bp Feature: gene Location: 20069-20572 bp Feature: domain Description: DDE_Tnp_IS1 Location: 20180-20570 bp Feature: domain Description: DDE_Tnp_IS1 Location: 20180-20570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: JACUYV010000083.1 Escherichia coli strain BP6308 83, whole genome shotgun sequence (18431 bp)
Overview 1 RT 1: 1-2789 bp Neighborhood of RT #1 [1, 2794] pyrE RVT-Retrons slmA dut Feature: gene Location: 1-330 bp Feature: domain Description: pyrE Location: 4-325 bp Feature: domain Description: pyrE Location: 4-325 bp Feature: gene Location: 628-1587 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 763-1312 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 763-1312 bp Feature: gene Location: 1633-2229 bp Feature: domain Description: slmA Location: 1639-2215 bp Feature: domain Description: slmA Location: 1639-2215 bp Feature: gene Location: 2336-2794 bp Feature: domain Description: dut Location: 2342-2789 bp Feature: domain Description: dut Location: 2342-2789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)