myRT

myRT report for GCA_014494895.1_ASM1449489v1

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Seq: JACUYE010000001.1 Escherichia coli strain BA3848 1, whole genome shotgun sequence (363331 bp)
Overview 1 RT 1: 215617-219074 bp Neighborhood of RT #1 [215617, 219074] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 215617-215781 bp Feature: gene Location: 215815-217317 bp Feature: domain Description: PRK13889 Location: 215818-216397 bp Feature: domain Description: PRK1 3889 Location: 21 581 8-21 6397 bp Feature: gene Location: 217394-218494 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 217535-218087 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 7535-21 8087 bp Feature: gene Location: 218487-218768 bp Feature: domain Description: HTH_XRE Location: 218502-218667 bp Feature: domain Description: HTH_XRE Location: 21 8502-21 8667 bp Feature: gene Location: 218859-219074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: JACUYE010000022.1 Escherichia coli strain BA3848 22, whole genome shotgun sequence (77348 bp)
Overview 1 RT 1: 800-4270 bp Neighborhood of RT #1 [800, 4377] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 800-1102 bp Feature: domain Description: Arm-DNA-bind_3 Location: 809-1061 bp Feature: domain Description: Arm-DNA-bind_3 Location: 809-1061 bp Feature: gene Location: 1286-1531 bp Feature: gene Location: 1557-2489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1659-2253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1659-2 2 53 bp Feature: gene Location: 2491-3477 bp Feature: gene Location: 4105-4377 bp Feature: domain Description: PRK09678 Location: 4114-4270 bp Feature: domain Description: PRK09678 Location: 4114-42 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JACUYE010000008.1 Escherichia coli strain BA3848 8, whole genome shotgun sequence (180279 bp)
Overview 1 RT 1: 22960-27251 bp Neighborhood of RT #1 [22960, 27251] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 22960-24222 bp Feature: domain Description: YesM Location: 23473-24214 bp Feature: domain Description: YesM Location: 23 473 -24214 bp Feature: gene Location: 24252-24422 bp Feature: gene Location: 24772-25293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24778-25060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24778-25060 bp Feature: domain Description: GIIM Note: maturase Location: 25108-25288 bp Feature: domain Description: GIIM Note: maturase Location: 25108-25288 bp Feature: gene Location: 25321-25860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25651-25729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25651-25729 bp Feature: gene Location: 25891-26088 bp Feature: gene Location: 26346-27251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACUYE010000083.1 Escherichia coli strain BA3848 83, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACUYE010000088.1 Escherichia coli strain BA3848 88, whole genome shotgun sequence (1930 bp)
Overview 1 RT 1: 59-1830 bp Neighborhood of RT #1 [59, 1830] RVT-GII Feature: gene Location: 59-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-115 1 bp Feature: gene Location: 1597-1830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII