myRT

myRT report for GCA_014494955.1_ASM1449495v1

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Seq: JACUYB010000021.1 Escherichia coli strain BA33222 21, whole genome shotgun sequence (89913 bp)
Overview 1 RT 1: 49218-53344 bp Neighborhood of RT #1 [49218, 53469] PRK13732 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 49218-49745 bp Feature: domain Description: PRK13732 Location: 49221-49743 bp Feature: domain Description: PRK1 3732 Location: 49221 -49743 bp Feature: gene Location: 49866-50339 bp Feature: gene Location: 50913-52580 bp Feature: domain Description: RVT_N Location: 50961-51198 bp Feature: domain Description: RVT_N Location: 50961 -51 1 98 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51249-51891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 249-51 891 bp Feature: domain Description: GIIM Note: maturase Location: 51942-52176 bp Feature: domain Description: GIIM Note: maturase Location: 51 942-521 76 bp Feature: domain Description: HNHc Note: nucleases Location: 52386-52545 bp Feature: domain Description: HNHc Note: nucleases Location: 52386-52545 bp Feature: gene Location: 52693-52995 bp Feature: gene Location: 53047-53469 bp Feature: domain Description: DUF1380 Location: 53050-53344 bp Feature: domain Description: DUF1 380 Location: 53050-53344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: JACUYB010000033.1 Escherichia coli strain BA33222 33, whole genome shotgun sequence (54357 bp)
Overview 1 RT 1: 24187-28478 bp Neighborhood of RT #1 [24187, 28478] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 24187-25449 bp Feature: domain Description: YesM Location: 24700-25441 bp Feature: domain Description: YesM Location: 2 4700-2 5441 bp Feature: gene Location: 25479-25649 bp Feature: gene Location: 25999-26520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26005-26287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6005-2 62 87 bp Feature: domain Description: GIIM Note: maturase Location: 26335-26515 bp Feature: domain Description: GIIM Note: maturase Location: 2 6335-2 6515 bp Feature: gene Location: 26548-27087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26878-26956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6878-2 6956 bp Feature: gene Location: 27118-27315 bp Feature: gene Location: 27573-28478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACUYB010000006.1 Escherichia coli strain BA33222 6, whole genome shotgun sequence (162743 bp)
Overview 1 RT 1: 28763-35006 bp Neighborhood of RT #1 [28763, 35143] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 28763-29029 bp Feature: domain Description: Phage_integrase Location: 28829-28925 bp Feature: domain Description: Phage_integrase Location: 28829-28925 bp Feature: gene Location: 29112-29582 bp Feature: gene Location: 29929-33138 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30457-30946 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 0457-3 0946 bp Feature: domain Description: nitrilase Location: 32452-33049 bp Feature: domain Description: nitrilase Location: 3 2452-3 3 049 bp Feature: gene Location: 33433-34236 bp Feature: domain Description: AbiEi_3_N Location: 33466-33727 bp Feature: domain Description: AbiEi_3 _N Location: 3 3 466-3 3 727 bp Feature: domain Description: AbiEi_3 Location: 33739-34195 bp Feature: domain Description: AbiEi_3 Location: 3 3 73 9-3 4195 bp Feature: gene Location: 34223-35143 bp Feature: domain Description: AbiEii Location: 34265-35006 bp Feature: domain Description: AbiEii Location: 3 4265-3 5006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JACUYB010000095.1 Escherichia coli strain BA33222 95, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)