myRT

myRT report for GCA_014495245.1_ASM1449524v1

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Seq: JACUXN010000109.1 Escherichia coli strain BA20936 109, whole genome shotgun sequence (2491 bp)
Overview 1 RT 1: 93-2489 bp Neighborhood of RT #1 [93, 2489] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Feature: domain Description: RVT_N Location: 141-378 bp Feature: domain Description: RVT_N Location: 1 41 -378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1 071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 22-1 356 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1 566-1 725 bp Feature: gene Location: 2040-2222 bp Feature: gene Location: 2334-2489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACUXN010000118.1 Escherichia coli strain BA20936 118, whole genome shotgun sequence (2005 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2003] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACUXN010000033.1 Escherichia coli strain BA20936 33, whole genome shotgun sequence (54327 bp)
Overview 1 RT 1: 24157-28448 bp Neighborhood of RT #1 [24157, 28448] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 24157-25419 bp Feature: domain Description: YesM Location: 24670-25411 bp Feature: domain Description: YesM Location: 24670-25411 bp Feature: gene Location: 25449-25619 bp Feature: gene Location: 25969-26490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25975-26257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25975-26257 bp Feature: domain Description: GIIM Note: maturase Location: 26305-26485 bp Feature: domain Description: GIIM Note: maturase Location: 263 05-26485 bp Feature: gene Location: 26518-27057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26848-26926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26848-26926 bp Feature: gene Location: 27088-27285 bp Feature: gene Location: 27543-28448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JACUXN010000006.1 Escherichia coli strain BA20936 6, whole genome shotgun sequence (162719 bp)
Overview 1 RT 1: 28739-34982 bp Neighborhood of RT #1 [28739, 35119] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 28739-29005 bp Feature: domain Description: Phage_integrase Location: 28805-28901 bp Feature: domain Description: Phage_integrase Location: 28805-28901 bp Feature: gene Location: 29088-29558 bp Feature: gene Location: 29905-33114 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30433-30922 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 304 33-30922 bp Feature: domain Description: nitrilase Location: 32428-33025 bp Feature: domain Description: nitrilase Location: 324 28-33025 bp Feature: gene Location: 33409-34212 bp Feature: domain Description: AbiEi_3_N Location: 33442-33703 bp Feature: domain Description: AbiEi_3_N Location: 334 4 2-33703 bp Feature: domain Description: AbiEi_3 Location: 33715-34171 bp Feature: domain Description: AbiEi_3 Location: 33715-34 171 bp Feature: gene Location: 34199-35119 bp Feature: domain Description: AbiEii Location: 34241-34982 bp Feature: domain Description: AbiEii Location: 34 24 1-34 982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JACUXN010000090.1 Escherichia coli strain BA20936 90, whole genome shotgun sequence (4669 bp)
Overview 1 RT 1: 586-3912 bp Neighborhood of RT #1 [586, 3912] HTH_XRE RVT-Retrons FRG Feature: gene Location: 586-978 bp Feature: gene Location: 1015-1335 bp Feature: domain Description: HTH_XRE Location: 1030-1189 bp Feature: domain Description: HTH_XRE Location: 1030-1189 bp Feature: gene Location: 1301-2251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1481-2024 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1481-2024 bp Feature: gene Location: 2360-3724 bp Feature: domain Description: FRG Location: 2927-3212 bp Feature: domain Description: FRG Location: 2927-3212 bp Feature: gene Location: 3763-3912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)