myRT

myRT report for GCA_014495325.1_ASM1449532v1

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Seq: JACUXI010000012.1 Escherichia coli strain BA16699 12, whole genome shotgun sequence (129591 bp)
Overview 1 RT 1: 45118-53539 bp Neighborhood of RT #1 [45118, 53547] prfC PRK10597 RVT-Retrons TIR_2 phage_tail_N Peptidase_S74 APC_N_CC Feature: gene Location: 45118-46704 bp Feature: domain Description: prfC Location: 45136-46702 bp Feature: domain Description: prfC Location: 451 36-46702 bp Feature: gene Location: 46924-47184 bp Feature: domain Description: PRK10597 Location: 46927-47167 bp Feature: domain Description: PRK1 0597 Location: 46927-471 67 bp Feature: gene Location: 47542-49146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47833-48424 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47833-48424 bp Feature: domain Description: TIR_2 Location: 48751-49084 bp Feature: domain Description: TIR_2 Location: 48751 -49084 bp Feature: gene Location: 49476-49649 bp Feature: gene Location: 49774-53547 bp Feature: domain Description: phage_tail_N Location: 49777-50176 bp Feature: domain Description: phage_tail_N Location: 49777-501 76 bp Feature: domain Description: Peptidase_S74 Location: 53116-53263 bp Feature: domain Description: Peptidase_S74 Location: 531 1 6-53263 bp Feature: domain Description: APC_N_CC Location: 53416-53539 bp Feature: domain Description: APC_N_CC Location: 5341 6-53539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), phage_tail_N (pfam08400), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689)

Seq: JACUXI010000021.1 Escherichia coli strain BA16699 21, whole genome shotgun sequence (84464 bp)
Overview 1 RT 1: 13514-19966 bp Neighborhood of RT #1 [13514, 19966] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 13514-13765 bp Feature: gene Location: 13795-14631 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 14284-14455 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 142 84-14455 bp Feature: gene Location: 15287-16387 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15470-15998 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15470-15998 bp Feature: gene Location: 16502-18748 bp Feature: domain Description: AAA_15 Location: 16505-17513 bp Feature: domain Description: AAA_15 Location: 16505-17513 bp Feature: gene Location: 19661-19966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: JACUXI010000025.1 Escherichia coli strain BA16699 25, whole genome shotgun sequence (77108 bp)
Overview 1 RT 1: 800-4270 bp Neighborhood of RT #1 [800, 4377] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 800-1102 bp Feature: domain Description: Arm-DNA-bind_3 Location: 809-1061 bp Feature: domain Description: Arm-DNA-bind_3 Location: 809-1061 bp Feature: gene Location: 1286-1531 bp Feature: gene Location: 1557-2489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1659-2253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1659-2253 bp Feature: gene Location: 2491-3477 bp Feature: gene Location: 4105-4377 bp Feature: domain Description: PRK09678 Location: 4114-4270 bp Feature: domain Description: PRK09678 Location: 4114-4270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JACUXI010000053.1 Escherichia coli strain BA16699 53, whole genome shotgun sequence (14889 bp)
Overview 1 RT 1: 4219-8653 bp Neighborhood of RT #1 [4219, 8658] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 4219-4410 bp Feature: gene Location: 4481-4795 bp Feature: gene Location: 5831-7732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6098-6929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6098-6929 bp Feature: domain Description: Intron_maturas2 Location: 7043-7301 bp Feature: domain Description: Intron_maturas2 Location: 704 3-7301 bp Feature: domain Description: HNHc Note: nucleases Location: 7475-7637 bp Feature: domain Description: HNHc Note: nucleases Location: 74 75-7637 bp Feature: gene Location: 7927-8367 bp Feature: domain Description: PRK13732 Location: 7933-8365 bp Feature: domain Description: PRK13732 Location: 7933-8365 bp Feature: gene Location: 8425-8658 bp Feature: domain Description: DUF905 Location: 8455-8653 bp Feature: domain Description: DUF905 Location: 84 55-8653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JACUXI010000079.1 Escherichia coli strain BA16699 79, whole genome shotgun sequence (1477 bp)
Overview 1 RT 1: 3-1140 bp Neighborhood of RT #1 [3, 1385] RVT-GII GIIM Feature: gene Location: 3-1385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135-867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135 -867 bp Feature: domain Description: GIIM Note: maturase Location: 942-1140 bp Feature: domain Description: GIIM Note: maturase Location: 942-1140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACUXI010000008.1 Escherichia coli strain BA16699 8, whole genome shotgun sequence (181158 bp)
Overview 1 RT 1: 23835-28126 bp Neighborhood of RT #1 [23835, 28126] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23835-25097 bp Feature: domain Description: YesM Location: 24348-25089 bp Feature: domain Description: YesM Location: 24348-25089 bp Feature: gene Location: 25127-25297 bp Feature: gene Location: 25647-26168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25653-25935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256 53-25935 bp Feature: domain Description: GIIM Note: maturase Location: 25983-26163 bp Feature: domain Description: GIIM Note: maturase Location: 25983-26 16 3 bp Feature: gene Location: 26196-26735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26526-26604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 526 -26 6 04 bp Feature: gene Location: 26766-26963 bp Feature: gene Location: 27221-28126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)