myRT

myRT report for GCA_014495585.1_ASM1449558v1

Download annotations/find similar RTs

Seq: JACUWU010000019.1 Escherichia coli strain BA11691 19, whole genome shotgun sequence (72009 bp)
Overview 1 RT 1: 16017-19474 bp Neighborhood of RT #1 [16017, 19474] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 16017-16181 bp Feature: gene Location: 16215-17717 bp Feature: domain Description: PRK13889 Location: 16218-16797 bp Feature: domain Description: PRK1 3889 Location: 1 621 8-1 6797 bp Feature: gene Location: 17794-18894 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17935-18487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 7935-1 8487 bp Feature: gene Location: 18887-19168 bp Feature: domain Description: HTH_XRE Location: 18902-19067 bp Feature: domain Description: HTH_XRE Location: 1 8902-1 9067 bp Feature: gene Location: 19259-19474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: JACUWU010000003.1 Escherichia coli strain BA11691 3, whole genome shotgun sequence (297194 bp)
Overview 1 RT 1: 800-4270 bp Neighborhood of RT #1 [800, 4377] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 800-1102 bp Feature: domain Description: Arm-DNA-bind_3 Location: 809-1061 bp Feature: domain Description: Arm-DNA-bind_3 Location: 809-1061 bp Feature: gene Location: 1286-1531 bp Feature: gene Location: 1557-2489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1659-2253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1659-2 2 53 bp Feature: gene Location: 2491-3477 bp Feature: gene Location: 4105-4377 bp Feature: domain Description: PRK09678 Location: 4114-4270 bp Feature: domain Description: PRK09678 Location: 4114-42 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JACUWU010000041.1 Escherichia coli strain BA11691 41, whole genome shotgun sequence (35044 bp)
Overview 1 RT 1: 13609-20061 bp Neighborhood of RT #1 [13609, 20061] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 13609-13860 bp Feature: gene Location: 13890-14726 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 14379-14550 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 143 79-14550 bp Feature: gene Location: 15382-16482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15565-16093 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15565-16093 bp Feature: gene Location: 16597-18873 bp Feature: domain Description: AAA_15 Location: 16630-17638 bp Feature: domain Description: AAA_15 Location: 1663 0-1763 8 bp Feature: gene Location: 19756-20061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: JACUWU010000047.1 Escherichia coli strain BA11691 47, whole genome shotgun sequence (25967 bp)
Overview 1 RT 1: 18054-22952 bp Neighborhood of RT #1 [18054, 22952] PRK13704 RVT-GII Intron_maturas2 HNHc PRK10276 Feature: gene Location: 18054-18650 bp Feature: gene Location: 18647-19879 bp Feature: domain Description: PRK13704 Location: 19526-19871 bp Feature: domain Description: PRK13704 Location: 19526-19871 bp Feature: gene Location: 20071-21972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20338-21169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20338-21169 bp Feature: domain Description: Intron_maturas2 Location: 21283-21541 bp Feature: domain Description: Intron_maturas2 Location: 21283-2154 1 bp Feature: domain Description: HNHc Note: nucleases Location: 21715-21877 bp Feature: domain Description: HNHc Note: nucleases Location: 21715-21877 bp Feature: gene Location: 22330-22749 bp Feature: domain Description: PRK10276 Location: 22369-22735 bp Feature: domain Description: PRK10276 Location: 22369-22735 bp Feature: gene Location: 22785-22952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13704 (plasmid SOS inhibition protein A; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JACUWU010000008.1 Escherichia coli strain BA11691 8, whole genome shotgun sequence (177957 bp)
Overview 1 RT 1: 149841-154124 bp Neighborhood of RT #1 [149841, 154132] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 149841-150746 bp Feature: gene Location: 150884-151075 bp Feature: gene Location: 151232-151771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151562-151640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 15 62-15 1640 bp Feature: gene Location: 151799-152320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151805-152087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 1805 -15 2087 bp Feature: domain Description: GIIM Note: maturase Location: 152135-152315 bp Feature: domain Description: GIIM Note: maturase Location: 15 2135 -15 2315 bp Feature: gene Location: 152642-152830 bp Feature: gene Location: 152870-154132 bp Feature: domain Description: YesM Location: 153383-154124 bp Feature: domain Description: YesM Location: 15 3383-15 4124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JACUWU010000086.1 Escherichia coli strain BA11691 86, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-16 6 2 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)