myRT

myRT report for GCA_014525155.1_ASM1452515v1

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Seq: JACGMC010000001.1 Vibrio vulnificus strain AM36846 Contig1_AM36846, whole genome shotgun sequence (337215 bp)
Overview 1 RT 1: 225038-228899 bp Neighborhood of RT #1 [225038, 228901] RplQ RVT-GII GIIM DUF2780 PRK11570 Feature: gene Location: 225038-225421 bp Feature: domain Description: RplQ Location: 225041-225386 bp Feature: domain Description: RplQ Location: 225041 -225386 bp Feature: gene Location: 225672-225800 bp Feature: gene Location: 226013-227326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226232-226844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226232-226844 bp Feature: domain Description: GIIM Note: maturase Location: 226898-227102 bp Feature: domain Description: GIIM Note: maturase Location: 226898-2271 02 bp Feature: gene Location: 227653-228147 bp Feature: domain Description: DUF2780 Location: 227737-228133 bp Feature: domain Description: DUF2780 Location: 227737-2281 33 bp Feature: gene Location: 228281-228901 bp Feature: domain Description: PRK11570 Location: 228284-228899 bp Feature: domain Description: PRK1 1 570 Location: 228284-228899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RplQ (COG0203), RVT-GII, GIIM (pfam08388), DUF2780 (pfam11075), PRK11570 (peptidyl-prolyl cis-trans isomerase; Provisional)

Seq: JACGMC010000002.1 Vibrio vulnificus strain AM36846 Contig2_AM36846, whole genome shotgun sequence (4871230 bp)
Overview 1 RT 1: 25951-32649 bp 2 RT 2: 2641808-2646335 bp 3 RT 3: 2768038-2772346 bp 4 RT 4: 4459216-4468071 bp 5 RT 5: 4510176-4512347 bp Neighborhood of RT #1 [25951, 32649] MngR RVT_N RVT-GII LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII KOG1005 YkfC GIIM Neighborhood of RT #2 [2641808, 2646340] moaE RVT-GII GIIM PRK15104 Neighborhood of RT #3 [2768038, 2772390] COG4861 GIIM RVT_N RVT-GII TnpB_IS66 Neighborhood of RT #4 [4459216, 4468094] HTH_23 HTH_33 DDE_3 RVT-GII GIIM TnpB_IS66 LZ_Tnp_IS66 zf-IS66 TnpB_IS66 HTH_23 HTH_33 DDE_3 RVT-GII TnpB_IS66 Neighborhood of RT #5 [4510176, 4512391] TnpB_IS66 RVT-GII GIIM TnpB_IS66 Feature: gene Location: 25951-26685 bp Feature: domain Description: MngR Location: 25966-26674 bp Feature: domain Description: MngR Location: 2 5966-2 6674 bp Feature: gene Location: 27250-27381 bp Feature: gene Location: 27865-28302 bp Feature: RT Description: RVT_N Location: 27919-28162 bp Feature: RT Description: RVT_N Location: 2 7919-2 8162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28207-28282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 82 07-2 82 82 bp Feature: gene Location: 28321-29976 bp Feature: domain Description: LZ_Tnp_IS66 Location: 28531-28750 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 8531-2 8750 bp Feature: domain Description: DDE_Tnp_IS66 Location: 28945-29827 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 8945-2 982 7 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 29845-29959 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 9845-2 9959 bp Feature: gene Location: 30044-30409 bp Feature: domain Description: TnpB_IS66 Location: 30083-30371 bp Feature: domain Description: TnpB_IS66 Location: 30083-30371 bp Feature: gene Location: 30409-30708 bp Feature: gene Location: 30772-31812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30793-31000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30793-31000 bp Feature: domain Description: KOG1005 Location: 31000-31189 bp Feature: domain Description: KOG1005 Location: 31000-31189 bp Feature: domain Description: YkfC Location: 31234-31357 bp Feature: domain Description: YkfC Location: 312 34-31357 bp Feature: domain Description: GIIM Note: maturase Location: 31366-31588 bp Feature: domain Description: GIIM Note: maturase Location: 31366-31588 bp Feature: gene Location: 32005-32304 bp Feature: gene Location: 32500-32649 bp Feature: gene Location: 2641808-2642263 bp Feature: domain Description: moaE Location: 2641814-2642255 bp Feature: domain Description: moaE Location: 2 641814-2 642 2 55 bp Feature: gene Location: 2642527-2642655 bp Feature: gene Location: 2642868-2644181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2643087-2643699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 643087-2 643699 bp Feature: domain Description: GIIM Note: maturase Location: 2643753-2643957 bp Feature: domain Description: GIIM Note: maturase Location: 2 643753-2 643957 bp Feature: gene Location: 2644208-2644351 bp Feature: gene Location: 2644709-2646340 bp Feature: domain Description: PRK15104 Location: 2644724-2646335 bp Feature: domain Description: PRK15104 Location: 2 64472 4-2 646335 bp Feature: gene Location: 2768038-2769027 bp Feature: domain Description: COG4861 Location: 2768212-2769010 bp Feature: domain Description: COG4861 Location: 2 7682 12 -2 769010 bp Feature: gene Location: 2769887-2770327 bp Feature: domain Description: GIIM Note: maturase Location: 2769893-2770103 bp Feature: domain Description: GIIM Note: maturase Location: 2 769893-2 770103 bp Feature: gene Location: 2770287-2771366 bp Feature: RT Description: RVT_N Location: 2770341-2770584 bp Feature: RT Description: RVT_N Location: 2 770341-2 770584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2770629-2771256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 77062 9-2 7712 56 bp Feature: gene Location: 2771720-2772040 bp Feature: gene Location: 2772037-2772390 bp Feature: domain Description: TnpB_IS66 Location: 2772064-2772346 bp Feature: domain Description: TnpB_IS66 Location: 2 772 064-2 772 346 bp Feature: gene Location: 4459216-4459785 bp Feature: gene Location: 4460101-4461132 bp Feature: domain Description: HTH_23 Location: 4460173-4460290 bp Feature: domain Description: HTH_2 3 Location: 4460173-44602 90 bp Feature: domain Description: HTH_33 Location: 4460383-4460554 bp Feature: domain Description: HTH_33 Location: 4460383-4460554 bp Feature: domain Description: DDE_3 Location: 4460596-4461025 bp Feature: domain Description: DDE_3 Location: 4460596-446102 5 bp Feature: gene Location: 4461289-4462536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4461493-4462150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4461493-4462 150 bp Feature: domain Description: GIIM Note: maturase Location: 4462228-4462450 bp Feature: domain Description: GIIM Note: maturase Location: 4462 2 2 8-4462 450 bp Feature: gene Location: 4462589-4462783 bp Feature: domain Description: TnpB_IS66 Location: 4462592-4462748 bp Feature: domain Description: TnpB_IS66 Location: 4462 592 -4462 748 bp Feature: gene Location: 4462843-4463514 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4463080-4463272 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4463080-44632 72 bp Feature: domain Description: zf-IS66 Location: 4463290-4463374 bp Feature: domain Description: zf-IS66 Location: 44632 90-4463374 bp Feature: gene Location: 4464786-4464980 bp Feature: domain Description: TnpB_IS66 Location: 4464789-4464945 bp Feature: domain Description: TnpB_IS66 Location: 4464789-4464945 bp Feature: gene Location: 4465322-4466353 bp Feature: domain Description: HTH_23 Location: 4465394-4465511 bp Feature: domain Description: HTH_2 3 Location: 4465394-4465511 bp Feature: domain Description: HTH_33 Location: 4465604-4465775 bp Feature: domain Description: HTH_33 Location: 4465604-4465775 bp Feature: domain Description: DDE_3 Location: 4465817-4466246 bp Feature: domain Description: DDE_3 Location: 4465817-44662 46 bp Feature: gene Location: 4466568-4467380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4466772-4467363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4466772 -4467363 bp Feature: gene Location: 4467521-4467661 bp Feature: gene Location: 4467894-4468094 bp Feature: domain Description: TnpB_IS66 Location: 4467921-4468071 bp Feature: domain Description: TnpB_IS66 Location: 446792 1-4468071 bp Feature: gene Location: 4510176-4510376 bp Feature: domain Description: TnpB_IS66 Location: 4510203-4510353 bp Feature: domain Description: TnpB_IS66 Location: 45102 03-4510353 bp Feature: gene Location: 4510736-4510912 bp Feature: gene Location: 4510890-4511702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4511094-4511685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4511094-4511685 bp Feature: gene Location: 4511788-4512138 bp Feature: domain Description: GIIM Note: maturase Location: 4511830-4512052 bp Feature: domain Description: GIIM Note: maturase Location: 4511830-4512 052 bp Feature: gene Location: 4512191-4512391 bp Feature: domain Description: TnpB_IS66 Location: 4512194-4512347 bp Feature: domain Description: TnpB_IS66 Location: 4512 194-4512 347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MngR (COG2188), RVT_N (pfam13655), RVT-GII, LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), KOG1005 (KOG1005, Telomerase catalytic subunit/reverse transcriptase TERT ), YkfC (COG3344), GIIM (pfam08388)
moaE (PRK10678), PRK15104 (oligopeptide ABC transporter substrate-binding protein OppA; Provisional), COG4861 (Uncharacterized protein ), HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), zf-IS66 (pfam13005)